Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1427
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.13 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    24   1.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   5.0  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 390 FVLALFEEHEDAFSAFVEPFVILLILIAN 476
           +V+ L +EH+DAF   V  F IL  +  N
Sbjct: 467 YVIILDDEHDDAFIGIVNQFHILQFITKN 495


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -1

Query: 436 KAENASSCSSNKANTNEIIAANSKILTKRSSNCSKTN--CH 320
           K E  S    NK+  N  + ++S +   R +NC+     CH
Sbjct: 18  KCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCH 58


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 642 DKIPADIRLIKIYST 686
           D+IP D+RL +I ST
Sbjct: 542 DRIPIDVRLSEIAST 556


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 217 ILRLLPRISCERPPWWNYYVAVSSRSYLNT*EGQF 113
           +L +L  ++  RP WW ++ A S  +     EG+F
Sbjct: 15  LLTILIFVTSHRPAWW-FWTATSHEASAPA-EGKF 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,776
Number of Sequences: 438
Number of extensions: 3908
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)