Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1426
         (469 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4W2V6 Cluster: Merozoite surface protein 1; n=1; Plasm...    34   1.3  
UniRef50_Q8GDM2 Cluster: Int; n=5; Enterobacteriaceae|Rep: Int -...    34   1.8  
UniRef50_Q4H3N3 Cluster: Epidermal growth factor receptor; n=1; ...    33   4.1  
UniRef50_Q4AM36 Cluster: Similar to Flavodoxin; n=1; Chlorobium ...    32   7.2  
UniRef50_Q0UJM9 Cluster: Putative uncharacterized protein; n=1; ...    31   9.5  

>UniRef50_Q4W2V6 Cluster: Merozoite surface protein 1; n=1;
           Plasmodium gallinaceum|Rep: Merozoite surface protein 1
           - Plasmodium gallinaceum
          Length = 1622

 Score = 34.3 bits (75), Expect = 1.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 370 NFLVTA*LCHKKIKIEKGRLSKMELRKYDF 281
           NFL TA +CH+KI +    +S+  L KY F
Sbjct: 724 NFLNTAYICHRKILLSNSTMSESSLEKYQF 753


>UniRef50_Q8GDM2 Cluster: Int; n=5; Enterobacteriaceae|Rep: Int -
           Photorhabdus luminescens (Xenorhabdus luminescens)
          Length = 465

 Score = 33.9 bits (74), Expect = 1.8
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 143 ARVSVIQPGLSVSL-STVQRLLRSYEKTGSNLRSPGTDRTRCTTVRE 6
           AR  +  P +S+ L  + QR LRSY KT     SPG+ R R + +R+
Sbjct: 181 ARGVMTAPQVSLPLLESYQRWLRSYRKTNGQPYSPGSQRDRLSVLRQ 227


>UniRef50_Q4H3N3 Cluster: Epidermal growth factor receptor; n=1;
           Ciona intestinalis|Rep: Epidermal growth factor receptor
           - Ciona intestinalis (Transparent sea squirt)
          Length = 1462

 Score = 32.7 bits (71), Expect = 4.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 106 RCQQYNDFSEVTRKLALTYVAQEQTELGVPQY 11
           RCQ Y D+++V  +L   +V  + T L VP Y
Sbjct: 580 RCQYYTDYTDVNGQLTPAWVTDQTTGLAVPGY 611


>UniRef50_Q4AM36 Cluster: Similar to Flavodoxin; n=1; Chlorobium
           phaeobacteroides BS1|Rep: Similar to Flavodoxin -
           Chlorobium phaeobacteroides BS1
          Length = 175

 Score = 31.9 bits (69), Expect = 7.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 360 LLHSYVIKKSKLKKGDFRRWNYEN 289
           L+H ++IK +K+  GDFRRW   N
Sbjct: 134 LMHKFMIKVAKVPVGDFRRWEEIN 157


>UniRef50_Q0UJM9 Cluster: Putative uncharacterized protein; n=1;
            Phaeosphaeria nodorum|Rep: Putative uncharacterized
            protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 2320

 Score = 31.5 bits (68), Expect = 9.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 182  LIECTRILTMLETARVSVIQPGLSVSLSTVQRLLRSYEKTGSN 54
            LIE TR++      R+S +QPG S       +L+ S E  G N
Sbjct: 1594 LIELTRVIKEAPEERISELQPGTSTIHHVFDQLISSIEFAGPN 1636


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 406,708,982
Number of Sequences: 1657284
Number of extensions: 7002572
Number of successful extensions: 13988
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13985
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25610991215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)