Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1426
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    28   0.82 
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    27   1.9  

>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 164 ILTMLETARVSVIQPGLSVSLSTVQRLLRSYEKTGSNLRSPGTDRTRCT 18
           +LT  +T  V+ IQP LS S+S++     +  K+ S     G+  T+ +
Sbjct: 148 VLTDEDTEEVASIQPALSTSVSSLSLASTAMSKSASASEFSGSSVTKAS 196


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 243 YTHLINDRIKTKAKSYFRSSIFESLPFSILIF 338
           Y H+ ++  KTK K+YFR+ + +  P  + IF
Sbjct: 210 YVHIQDELPKTKVKNYFRTYLRQK-PEELFIF 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,771,255
Number of Sequences: 5004
Number of extensions: 31877
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)