Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1426
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0309 - 2233573-2234556,2234670-2234721,2235406-2236391,223...    30   0.81 
01_06_0951 + 33301850-33302175,33302318-33303216,33303327-33303934     29   2.5  
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367...    27   5.7  
05_01_0453 - 3592555-3592897,3592997-3593067,3593372-3593465,359...    27   7.5  
03_02_0510 - 9009980-9011392                                           27   7.5  
05_05_0377 - 24498664-24500215,24500306-24500643                       27   10.0 

>06_01_0309 -
           2233573-2234556,2234670-2234721,2235406-2236391,
           2237790-2238050
          Length = 760

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 213 INQPVIMSLTTD*MHQNPHNAGNRQSKRDTARTVGVAVNSTTTSPKLREN 64
           + QP +    T+    +PH+ G    +RD A T GV+ ++   +P   +N
Sbjct: 485 LQQPEVSKENTEDSPPSPHDTGLGSGQRDQAATNGVSKSNRRATPVASDN 534


>01_06_0951 + 33301850-33302175,33302318-33303216,33303327-33303934
          Length = 610

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 28  VLSVPGLRRLEPVFS*LRRSRCTVDSDTDSPGCITLTLAVSSIVRIL 168
           VL V G +   P+FS +RR    +  D+D      L  AVS  V+ L
Sbjct: 418 VLRVAGFKNKAPMFSFVRRQNVALSVDSDKTDETELHAAVSGAVQHL 464


>05_01_0464 -
           3670397-3670525,3671152-3671244,3671366-3671537,
           3671626-3671702,3671819-3671978,3672104-3672213,
           3672321-3672380,3672492-3672629,3672922-3672999,
           3673227-3673333,3674506-3674598,3674708-3674723
          Length = 410

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 270 KTKAKSYFRSSIFESLPFSILIFL*HSYAVTKKF 371
           KT   +YF SS+F S  FS+ I L  S A  +K+
Sbjct: 98  KTDQDNYFLSSLFLSFQFSVQIALCGSEAQKQKY 131


>05_01_0453 -
           3592555-3592897,3592997-3593067,3593372-3593465,
           3593547-3593614,3593694-3593760,3593924-3594054,
           3594145-3594252,3594671-3594757,3594991-3595056,
           3595564-3595630,3596116-3596192,3596358-3596417,
           3597363-3597480,3597833-3597906,3598216-3598312,
           3599328-3599380,3599535-3599630,3599768-3599965,
           3600556-3600722,3600813-3600882,3601428-3601448,
           3602851-3602982
          Length = 754

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 171 HQNPHNAGNRQSKRDTARTVGVAVNST 91
           H   HN G   +KRDTAR + V+ + T
Sbjct: 81  HAASHNNGLVDTKRDTARALAVSKSET 107


>03_02_0510 - 9009980-9011392
          Length = 470

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 174 MHQNPHNAGNRQSKRDTARTVGVAVNSTTTSPKLRENW 61
           +H N  +AG   SKRD    +      T    KLRE+W
Sbjct: 336 IHSNEVDAGMDLSKRDELYKMLPVTIRTAVKAKLRESW 373


>05_05_0377 - 24498664-24500215,24500306-24500643
          Length = 629

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 28  VLSVPGLRRLEPVFS*LRRSRCTVDSDTDSPGCITLTLAVSSIVRIL 168
           VL V G +   P+F+ +RR    +  D+D      L  AV+  V+ L
Sbjct: 426 VLRVAGFKNAAPMFAFVRRKNVALSIDSDKTDEAELHAAVTEAVQHL 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,236,540
Number of Sequences: 37544
Number of extensions: 171343
Number of successful extensions: 289
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)