Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1425
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    85   6e-18
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    26   4.8  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   6.3  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 85.4 bits (202), Expect = 6e-18
 Identities = 46/85 (54%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 KDVXLRRLVYLCIKELSPMAQDVIIVTSSLTKDM-TGKDDEYRPAAIRALCSITDSTMLQ 432
           KD  LR+ VY+ IKELS +A+DVI++TSS+ KD  TG++  YRP AIR+L  + D+  + 
Sbjct: 76  KDPSLRQFVYIIIKELSVVAEDVIMITSSIMKDTATGRETIYRPNAIRSLIRVIDANTVP 135

Query: 433 AIERYMKQAIVDKNPAVGSAALVSA 507
           AIER +   IVD   AV SAALVSA
Sbjct: 136 AIERILTTGIVDPISAVASAALVSA 160



 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 29/74 (39%), Positives = 47/74 (63%)
 Frame = +2

Query: 32  MKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGXXLTTQ 211
           M   +   + D ++F N+++ T+ Q+AR FNS+ + PRK   +L+KI YL+  G     +
Sbjct: 1   MSYSKKDDDGDESIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQEK 60

Query: 212 EATDIFFATTKLFQ 253
           +AT++FF  TKLFQ
Sbjct: 61  QATELFFGITKLFQ 74


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 90  LSRFWKTLLSSSFPSRRAFIML 25
           L +FW  LL+++FP ++A   L
Sbjct: 401 LHQFWNALLNTTFPDKKAMAPL 422


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 56  EEDSNVFQNLDKTTLLQEARYFNSTPV 136
           EED N  +N  K+ +   A+Y  ST V
Sbjct: 302 EEDPNPLKNKSKSPIAHGAKYMTSTEV 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,817
Number of Sequences: 5004
Number of extensions: 48042
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)