Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1425
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 116 2e-26
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548... 100 8e-22
08_02_0707 - 20212190-20214592 29 2.1
11_04_0414 + 17386806-17387936 29 2.8
02_03_0065 - 14629676-14629804,14631119-14631247,14631383-146317... 29 2.8
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 29 3.7
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892... 28 4.9
02_05_1214 + 34976814-34979813 28 4.9
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549... 28 6.5
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 116 bits (278), Expect = 2e-26
Identities = 59/83 (71%), Positives = 63/83 (75%)
Frame = +1
Query: 256 KDVXLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRALCSITDSTMLQA 435
KD LRRLVYL IKELSP + +VIIVTSSL KDM K D YR AIR LC I D T+L
Sbjct: 81 KDAGLRRLVYLMIKELSPSSDEVIIVTSSLMKDMNSKTDMYRANAIRVLCRIIDGTLLTQ 140
Query: 436 IERYMKQAIVDKNPAVGSAALVS 504
IERY+KQAIVDKNP V SAALVS
Sbjct: 141 IERYLKQAIVDKNPVVASAALVS 163
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/77 (46%), Positives = 50/77 (64%)
Frame = +2
Query: 23 QSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGXXL 202
Q MK D ++ + + F ++K +LQEAR F+ + RKC ++TK+LYLLNQG
Sbjct: 3 QPYMKKDDDDEDVEYSPFYGIEKGAVLQEARAFHDPQLDARKCSQVITKLLYLLNQGETF 62
Query: 203 TTQEATDIFFATTKLFQ 253
T EAT++FFA TKLFQ
Sbjct: 63 TKVEATEVFFAVTKLFQ 79
>07_01_0718 +
5484553-5484601,5484836-5484933,5485028-5485078,
5485744-5485857,5485887-5485937,5485938-5486138,
5486240-5486341,5486879-5486986,5487053-5487286,
5488250-5488500,5488592-5488763,5489165-5489320,
5489405-5489455,5489499-5489591,5489814-5490014,
5490105-5490236,5490308-5490481,5490755-5490994,
5491213-5491407
Length = 890
Score = 100 bits (240), Expect = 8e-22
Identities = 60/100 (60%), Positives = 64/100 (64%), Gaps = 17/100 (17%)
Frame = +1
Query: 256 KDVXLRRLVYLCIKELSPMAQD-----------------VIIVTSSLTKDMTGKDDEYRP 384
KD LRR+VYL IKELSP A + VIIVTSSL KDM K D YR
Sbjct: 83 KDAGLRRMVYLMIKELSPSADEFSAVYGSLKVSVLHLLQVIIVTSSLMKDMNSKTDMYRA 142
Query: 385 AAIRALCSITDSTMLQAIERYMKQAIVDKNPAVGSAALVS 504
AIR LC I DST+L IERY+KQAIVDKNP V SAALVS
Sbjct: 143 NAIRVLCRIIDSTLLTQIERYLKQAIVDKNPVVASAALVS 182
Score = 74.9 bits (176), Expect = 4e-14
Identities = 34/67 (50%), Positives = 47/67 (70%)
Frame = +2
Query: 53 KEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGXXLTTQEATDIFF 232
+EE + F ++K +LQEAR F+ + R+C ++TK+LYLLNQG T EAT++FF
Sbjct: 15 EEEYYSPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFF 74
Query: 233 ATTKLFQ 253
ATTKLFQ
Sbjct: 75 ATTKLFQ 81
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -3
Query: 507 SGDQCGRSYXRILINNSLFHVPLNSLQHCTVCDATQSSNGGRSVLIVFTRHVLRK*RSHN 328
SGD + I + ++ +PLNS+ T C S NGG L H + R H
Sbjct: 600 SGDHAHQDISNISSDPAILEIPLNSIH--THCSEAHSCNGG---LQSSENHNKSRNRHHI 654
Query: 327 DH 322
DH
Sbjct: 655 DH 656
>11_04_0414 + 17386806-17387936
Length = 376
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 274 RLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRALCSI 411
R+VY+C + S++ K +T DE+ PAA A SI
Sbjct: 183 RIVYVCRDPKDAFVSMWLFTMSNMVKGVTTTTDEHHPAAAAAAPSI 228
>02_03_0065 -
14629676-14629804,14631119-14631247,14631383-14631736,
14631817-14632063,14632155-14632231,14632574-14632648,
14632721-14632822,14632966-14633084,14633538-14633627,
14634866-14635022,14635085-14635098,14635425-14635548,
14635628-14635678,14635793-14635891,14636962-14637072
Length = 625
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 214 GYGYIFCHYETVSVKDVXLRRLVYLCIKELSPMAQDV 324
GY Y+F +++ VKD +R LV L K L M +V
Sbjct: 24 GY-YLFIYFQPTDVKDPVIRPLVELDTKSLESMLPEV 59
>01_06_1795 -
39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = +1
Query: 199 INHAGGYGYIFCHYETVSVKDVXLRRLVYLCIKELSPMAQD-VIIVTSSLTKDMTGKDDE 375
+ H +G+I T + + L+R YL + D VI+V +++ KD+ +
Sbjct: 79 LGHDASFGHIHAVKMTHD-ESLPLKRTGYLAVSLFLDERHDLVILVVNTIQKDLRSDNYL 137
Query: 376 YRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPAVGSAALVS 504
AA+ A C + + A+ + + + AV A+++
Sbjct: 138 VVCAALTAACRLIGEEAIPAVLPQVVELLAHPKEAVRKKAVMA 180
>03_05_1014 -
29687343-29687410,29688054-29688191,29689246-29689294,
29689623-29689728,29690184-29690332,29690840-29690921,
29691308-29691360,29691644-29691729,29691855-29691909,
29692179-29692579,29693564-29693660,29694191-29694322,
29694426-29694476,29694659-29694751,29694917-29694992,
29695711-29695856,29696009-29696043,29696056-29696107,
29696290-29696401,29696617-29696813,29697456-29697560,
29697667-29697819,29698317-29698424,29698608-29698752,
29699374-29699432,29701397-29701441,29701677-29701730,
29701901-29702113,29702873-29702958,29704492-29704572,
29704670-29704729,29705599-29705644,29706212-29706286,
29706376-29706512,29708306-29708366,29708726-29708743,
29709710-29709743,29709811-29709902,29709997-29710029
Length = 1260
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 579 SEVMASCASFIQDALNPVRWLTDASGDQC 493
S +M A +RWLTDA G QC
Sbjct: 858 SNIMTVKPRLHHSATTTIRWLTDAHGKQC 886
>02_05_1214 + 34976814-34979813
Length = 999
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -1
Query: 521 G*QMQAETSAADPTAGFLSTIACFMYLSIACSIVLSVML 405
G +MQA S DP A L +IAC + IA +I + V++
Sbjct: 925 GERMQALLSWRDPRATVLFSIACVLAAVIAYTIPMKVLV 963
>06_03_1359 +
29554078-29554375,29554470-29554655,29554768-29554923,
29555557-29555694,29555789-29555909,29556339-29556345
Length = 301
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 453 FHVPLNSLQHCT--VCDATQSSNGGRSVLIVFTRHVLRK*RSHNDHI 319
FHV +HC + + ++SS GG+S + +F+RH R S + +
Sbjct: 122 FHV---CTEHCAAKMAEVSRSSEGGKSPMSLFSRHSRRSSSSEDGSV 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,187,135
Number of Sequences: 37544
Number of extensions: 315376
Number of successful extensions: 782
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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