Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1425
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)             128   3e-30
SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)                   29   2.2  
SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)                 27   8.7  

>SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score =  128 bits (310), Expect = 3e-30
 Identities = 61/85 (71%), Positives = 75/85 (88%)
 Frame = +1

Query: 253 VKDVXLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRALCSITDSTMLQ 432
           +  + LRR+VYL IKEL+ +A+DVIIVTSSLTKDMTGK+D +R +AIRALC ITD+TMLQ
Sbjct: 55  INQLMLRRMVYLAIKELANIAEDVIIVTSSLTKDMTGKEDMFRASAIRALCRITDNTMLQ 114

Query: 433 AIERYMKQAIVDKNPAVGSAALVSA 507
            IERY+KQA+VDKNP+V SAALVS+
Sbjct: 115 GIERYLKQAVVDKNPSVSSAALVSS 139



 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 37/53 (69%), Positives = 43/53 (81%), Gaps = 3/53 (5%)
 Frame = +2

Query: 41  RRDGKEED---SNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQ 190
           RRD K+E+   SN FQNLDK  +LQEAR FN TP++ RKCIHILTKILYL+NQ
Sbjct: 5   RRDKKDEEEGLSNPFQNLDKGQVLQEARVFNETPINVRKCIHILTKILYLINQ 57



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = +2

Query: 545 WINEAQEAMTSDHVMV 592
           W+NEAQEA++SD+ MV
Sbjct: 153 WVNEAQEAVSSDNTMV 168


>SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)
          Length = 604

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -3

Query: 420 TVCDATQSSNGGRSVLIVFTRHVLRK*RSHNDHILCHRTQLFN 292
           TVCD     N  R +++   + +      HN H   HR   FN
Sbjct: 48  TVCDRHGQLNVSRVLIVFMVKKIATGFHQHNGHTSFHRCHAFN 90


>SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)
          Length = 884

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -3

Query: 192 PWFSK*SIFVKIWM-HFLGCTGVELKYLA-SCKRVVLSRFWKTLLSSSFPSRRAFIMLCS 19
           PW S   + V +W   F   T V +K +A  C +   SRF     SS    R AF++ C 
Sbjct: 23  PWRSS-KVLVVVWKPKFAAPTIVFVKEMAFRCSKFFASRFSHIRKSSKDIKRSAFLLPCL 81

Query: 18  FNILL 4
             + +
Sbjct: 82  LQVFV 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,824,842
Number of Sequences: 59808
Number of extensions: 375922
Number of successful extensions: 864
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)