Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1425
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative / ga...   114   5e-26
At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9...    34   0.063
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP...    32   0.25 
At3g20190.1 68416.m02559 leucine-rich repeat transmembrane prote...    31   0.58 
At5g50330.1 68418.m06233 ABC1 family protein contains Pfam domai...    27   9.5  

>At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative /
           gamma-2 coat protein, putative / gamma-2 COP, putative
           similar to SP|Q9UBF2 Coatomer gamma-2 subunit (Gamma-2
           coat protein) (Gamma-2 COP) {Homo sapiens}; contains
           Pfam profile: PF01602 Adaptin N terminal region
          Length = 886

 Score =  114 bits (274), Expect = 5e-26
 Identities = 58/83 (69%), Positives = 63/83 (75%)
 Frame = +1

Query: 256 KDVXLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRALCSITDSTMLQA 435
           KD  LRR+VYL IKELSP + +VIIVTSSL KDM  K D YR  AIR LC I D T+L  
Sbjct: 82  KDTGLRRMVYLIIKELSPSSDEVIIVTSSLMKDMNSKIDMYRANAIRVLCRIIDGTLLTQ 141

Query: 436 IERYMKQAIVDKNPAVGSAALVS 504
           IERY+KQAIVDKNP V SAALVS
Sbjct: 142 IERYLKQAIVDKNPVVSSAALVS 164



 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 37/78 (47%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
 Frame = +2

Query: 23  QSIMKARRDGKEE-DSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGXX 199
           Q ++K   D  +E + + F  ++K  +LQEAR FN   V PR+C  ++TK+LYLLNQG  
Sbjct: 3   QPLVKKDDDHDDELEYSPFMGIEKGAVLQEARVFNDPQVDPRRCSQVITKLLYLLNQGES 62

Query: 200 LTTQEATDIFFATTKLFQ 253
            T  EAT++FF+ TKLFQ
Sbjct: 63  FTKVEATEVFFSVTKLFQ 80


>At5g11490.1 68418.m01341 adaptin family protein similar to
           SP|Q9WV76 Adapter-related protein complex 4 beta 1
           subunit (Beta subunit of AP- 4) {Mus musculus},
           beta-adaptin Drosophila 1 {Drosophila melanogaster}
           GI:434902; contains Pfam profile: PF01602 Adaptin N
           terminal region
          Length = 841

 Score = 34.3 bits (75), Expect = 0.063
 Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = +1

Query: 250 SVKDVXLRRLVYLCIKELSPMAQDVIIVTSS-LTKDMTGKDDEYRPAAIRALCSITDSTM 426
           +  D+ L+++ YL +   +    D+ ++T + L +D   +D   R  A+R+LCS+    +
Sbjct: 73  ATSDIVLKKMCYLYVGNYAKGNPDLSLLTINFLQRDCKDEDPMIRGLALRSLCSLRVPNL 132

Query: 427 LQAIERYMKQAIVDKNPAVGSAAL 498
           ++ +   +   + D N  V + A+
Sbjct: 133 VEYLVGPLGSGLKDNNSYVRTIAV 156


>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
           SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
           subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
           epsilon subunit) {Homo sapiens}; contains Pfam profile:
           PF01602 Adaptin N terminal region
          Length = 938

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 22/103 (21%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
 Frame = +1

Query: 199 INHAGGYGYIFCHYETVSVKDVXLRRLVYLCIKELSPMAQDVII-VTSSLTKDMTGKDDE 375
           + H   +GYI+    T    ++ L+R  YL +        D+II + +++ KD+   +  
Sbjct: 79  LGHDASFGYIYAVKMTHD-DNLLLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLRSDNYL 137

Query: 376 YRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPAVGSAALVS 504
              AA+ A+C + +   + A+   + + +  +  AV   A+++
Sbjct: 138 VVCAALNAICRLINEETIPAVLPQVVELLNHQKEAVRKKAIMA 180


>At3g20190.1 68416.m02559 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GB:AAA33715
           [Petunia integrifolia]
          Length = 679

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = -3

Query: 246 SFVVAKNISVASCVVNXXPWFSK*SIFVKIW---MHFLGCTG-VELKYLASCKRVVLSRF 79
           SF+ + + S++ C  N   WF    +   +W   +  +G TG ++L+ LA+ K +    F
Sbjct: 67  SFISSWDPSISPCKRNSENWFGVLCVTGNVWGLQLEGMGLTGKLDLEPLAAIKNLRTLSF 126

Query: 78  WKTLLSSSFPSRRAF 34
                + S PS + F
Sbjct: 127 MNNKFNGSMPSVKNF 141


>At5g50330.1 68418.m06233 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 428

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 283 YLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRAL 402
           Y C ++   MA++ ++ +  +T+D  GK+   R A++R L
Sbjct: 387 YSCAEQWRAMAEEALLASGRVTRD--GKERSRRRASLRRL 424


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,960,257
Number of Sequences: 28952
Number of extensions: 253016
Number of successful extensions: 625
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)