Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1424
         (776 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    26   0.39 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   2.7  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    23   3.6  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    23   3.6  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   8.3  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 544 VGDSIIRFHVPSALDSSFRSFPS 476
           +GDS++   +  AL SS ++FPS
Sbjct: 13  IGDSLLTLKLTHALSSSVQNFPS 35


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 237 YITFVLFIKQLMKLTCVV*SVFVNLL 160
           Y  F+LF   L+ L C+    +++LL
Sbjct: 242 YYAFILFTVHLLLLVCIYYFYYMHLL 267


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 592 PAFDVRVNGLD 560
           PAF VRV+GLD
Sbjct: 4   PAFKVRVSGLD 14


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 592 PAFDVRVNGLD 560
           PAF VRV+GLD
Sbjct: 4   PAFKVRVSGLD 14


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 543 TTVIPTSSPLTRTSKAGTTWKAG 611
           TT    SSP + TS   +T KAG
Sbjct: 161 TTSQNLSSPASSTSSTSSTEKAG 183


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,798
Number of Sequences: 336
Number of extensions: 3497
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)