Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1424
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    30   0.43 
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    29   0.74 
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    27   2.3  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    27   3.0  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    27   3.0  
SPBC19C2.07 |fba1||fructose-bisphosphate aldolase Fba1|Schizosac...    26   5.2  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    26   5.2  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   5.2  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   6.9  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    25   9.2  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   9.2  

>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 20/47 (42%), Positives = 23/47 (48%)
 Frame = -2

Query: 523 FHVPSALDSSFRSFPSPLGSGEYRFRKRSSLRRYMWARISFLREKSS 383
           F+ PSA+ +     PSPL S  Y  R   SLR   W R SF    SS
Sbjct: 158 FNDPSAIPN-----PSPLFSSAYATRINGSLRNDKWNRSSFSEALSS 199


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 459 SPEPSGDGKDLKELSNADGTWNLMIESPTTVIPTSSP-LTRTSKAGTTWKAGRASS*PLI 635
           S + SG   +L+    A+ +    ++S     P SSP  TR +   TT +   ASS  L 
Sbjct: 3   SSQQSGRANELRTPGRANSSSREAVDSSPLFFPASSPGSTRLTTPRTTARTPLASSPLLF 62

Query: 636 DTGKPSLN 659
           ++  P  N
Sbjct: 63  ESSSPGPN 70


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 536 ITDDGHTHVKSVNANIEGRYDVEGGKGQFVAVDRHRQAVTE 658
           +TD     VK   A +  R+D+  G GQ++ +D+   A+TE
Sbjct: 366 VTDYQRLRVKV--ALLAVRFDINTGSGQYMPIDQWNAALTE 404


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 475  PLGSGEYRFRKRSSLRRYMW 416
            P G+ +Y FR  +SL++++W
Sbjct: 1010 PTGTTQYTFRNEASLQKFLW 1029


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 531 IESPTTVIPTSSPLTRTSKAGTTWKAGRASS*PLIDTGKPSLNTKTRTPVLKRN 692
           IE+P T   TSSP + TS + T    G  +  P+I  G+   N+        +N
Sbjct: 232 IEAPAT---TSSPTSNTSSSKTRNNTGYTAKAPIIKRGQSVDNSAQERKTFAKN 282


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 638 HRQAVTEYQDENSSLETERELFNTAAHEXVVRKTDDRTQI 757
           H + +++ +DE  SL   R+ + T A + VVR T  R+ I
Sbjct: 160 HSKDLSQMRDEAKSLYEARKSYFTVALQYVVRVTSFRSSI 199


>SPBC19C2.07 |fba1||fructose-bisphosphate aldolase
           Fba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 334 TSPSDMLWDVQPLLHPVSLHLKLATELSRVHSLY 233
           T P D +WDV   L  V+ +  +A     VH +Y
Sbjct: 196 TQPED-IWDVYRELSSVTPYFSIAAAFGNVHGVY 228


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 26/98 (26%), Positives = 40/98 (40%)
 Frame = +3

Query: 294 NSGWTSHSMSEGDVSLIQDEDLLRRMWQQTEDFSRKKEIRAHMYXXXXXXXXNLYSPEPS 473
           NS  +S S +E   S I D  + RR +    D +   +IR H            ++ E S
Sbjct: 314 NSKASSISSAEEHPSNIDDSSIERRHY----DSNHSSQIRDHPSTNNNASSYQNFN-ETS 368

Query: 474 GDGKDLKELSNADGTWNLMIESPTTVIPTSSPLTRTSK 587
            +G+D      A+   +  +E+P  V P     T T K
Sbjct: 369 DEGEDNDATIRANNVRSSFLEAPLPVQPNVQAETVTPK 406


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 273 KCKETGCNSGWTSHSMSEGDVSLIQDED 356
           + KE   + GW+S++   GDVS+I+ E+
Sbjct: 543 RAKELVDSKGWSSNNPLFGDVSVIEAEE 570


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 682 KTGVLVLVFSDGLPVSINGYELAL 611
           K  +  ++  DG+P+  NG ELA+
Sbjct: 568 KNAIAFVLMGDGIPMMYNGQELAM 591


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = +1

Query: 364 GACGNRPKISPVRKKSAPTCTASGKNVYGTCTPQSPAE 477
           G+C      S   K     CT   + V G CTP    E
Sbjct: 206 GSCALLTSYSAKSKSLQVACTGDSRAVLGECTPDGSWE 243


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 507  ADGTWNLMIESPTTVIPTSSPLTRTSKAGTTW 602
            A GT +  +E    V+PT+  +T T+ +GT+W
Sbjct: 1070 AQGTTSGTVE---IVVPTAGTVTSTTGSGTSW 1098


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,273
Number of Sequences: 5004
Number of extensions: 58397
Number of successful extensions: 207
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)