Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1424
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0584 - 18714461-18716296                                         31   1.3  
08_02_0917 - 22609543-22609852,22609925-22610266,22610596-226108...    31   1.3  
03_05_0889 + 28543106-28543354,28544379-28544465,28544548-285446...    30   2.4  
09_02_0243 - 6192324-6192443,6193246-6193374,6193528-6193695,619...    28   9.5  
04_04_0796 + 28129350-28130405                                         28   9.5  

>09_04_0584 - 18714461-18716296
          Length = 611

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
 Frame = +3

Query: 315 SMSEGDVS--LIQDEDLLRRMWQQTEDFSRKKEIRAHMYXXXXXXXXNLYSPEPSGDGKD 488
           +++E DVS   I+ EDL RRMW+      R KE +  +         +    +P  D   
Sbjct: 24  NLTENDVSDEEIEAEDLARRMWKDRIKLRRIKERQDRLALALQQAELDKSKGKPISDQAM 83

Query: 489 LKELSNA-DGTWNLMIE 536
            K++S A DG    M++
Sbjct: 84  RKKMSRAQDGILKYMLK 100


>08_02_0917 -
           22609543-22609852,22609925-22610266,22610596-22610858,
           22611318-22612349
          Length = 648

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 515 NVESDDRITDDGHTHVKSVNANIEGRYDVEGGKGQFVAVDRHR 643
           NV   + +T DG  HV S +A+ +  + V GG GQF  + R R
Sbjct: 170 NVAQLEVVTGDGECHVCSRSADPDLFFAVLGGLGQFGVITRAR 212


>03_05_0889 +
           28543106-28543354,28544379-28544465,28544548-28544604,
           28544704-28544781
          Length = 156

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 355 IFCGACGNRPKISPVRKKSAPTC 423
           +FCG CG   K   VR  S P C
Sbjct: 10  LFCGVCGTLLKFDSVRSASCPLC 32


>09_02_0243 -
           6192324-6192443,6193246-6193374,6193528-6193695,
           6193833-6194023,6194137-6194281,6195307-6195462
          Length = 302

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/83 (22%), Positives = 36/83 (43%)
 Frame = +2

Query: 521 ESDDRITDDGHTHVKSVNANIEGRYDVEGGKGQFVAVDRHRQAVTEYQDENSSLETEREL 700
           E  D+  +       S N + EG  DV+  K   V +   +  + + +DE  +   ++ L
Sbjct: 79  ELSDKEENQRKDQENSTNVSNEGTEDVDLSKEDLVQLVLEKDGLLKSKDEEINDMKDKVL 138

Query: 701 FNTAAHEXVVRKTDDRTQISSLY 769
            + A  E V+ +T   ++ S  Y
Sbjct: 139 RSYAEMENVIARTKRESENSKKY 161


>04_04_0796 + 28129350-28130405
          Length = 351

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 16  LSNRSDAKSVARLPFA*TRINLTYRPRVTPKSAEPSIRHER 138
           LS+ S++ + AR+  A T   +T   R+T  S EPS  H R
Sbjct: 218 LSSLSNSAAAARVEVASTPCWVTAPARLTASSDEPSTSHHR 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,503,041
Number of Sequences: 37544
Number of extensions: 421261
Number of successful extensions: 1237
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)