Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1424
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = -2

Query: 529  IRFHVPSALDSSFRSFPSPLGSGEYRFRKRSSLRRYMWARISFLREKSSVCCHMRRKRSS 350
            +R+ +PSA D S  S  SPL        KR ++  Y    +  + EK+ V     ++R  
Sbjct: 1200 LRYAIPSAGDISIESKSSPL------VYKR-NINTYTLDGVGSV-EKTGVSTLRGQERQR 1251

Query: 349  S*IRDTSPSDML 314
            S  +D+SP+  L
Sbjct: 1252 SLFKDSSPATAL 1263


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -2

Query: 625 YELALPAFHVVPAFDVRVNGLDVGMTVVGDSI 530
           Y+L+   F ++P   + V  + +G+ +  DS+
Sbjct: 206 YQLSCILFFLIPMVFIAVLYIRIGLRIQSDSL 237


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 370 MRRKRSSS*IRDTSPSDMLWDVQPL 296
           M+   +   +R+  P+D LW V P+
Sbjct: 370 MKHYENEMRLRNGCPADWLWIVPPI 394


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 303 WTSHSMSEGDVSLIQDEDLLRRMWQQTED 389
           WT + +    +  + +E + RR W+Q +D
Sbjct: 23  WTKNMVFVVGLERVAEELMGRRRWKQYQD 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,238
Number of Sequences: 438
Number of extensions: 3798
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)