Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1424
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56720.1 68416.m06309 expressed protein                             33   0.28 
At1g41855.1 68414.m04833 hypothetical protein                          28   6.0  

>At3g56720.1 68416.m06309 expressed protein 
          Length = 386

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
 Frame = +2

Query: 401 ERNPRPHVPPQGRTFTEPVLPRAQRRWERPEGAI*RGWNVES--DDRITDDGHTHVKSVN 574
           ERN  P+ P   R  +EPV  R + RWE       RG  V+S   DR + D +   K   
Sbjct: 50  ERNQSPN-PKHSRKDSEPVHVRKEDRWESDRSRYGRG-GVDSHRHDRYSRDDNYGYKRDE 107

Query: 575 ANIEGR------YDVEGGKGQFVAVDRHRQAVTEYQD-ENSSLETERELFNTAAHEXVVR 733
            N  GR       D  GG+      DR R+  TEY    N S  +  + ++ + H   V+
Sbjct: 108 YNRHGRDARSTSRDSRGGRHS----DR-RRVETEYSRLRNDSDRSSHDKYSNSGHR--VK 160

Query: 734 KTDDRTQISS 763
             +    +SS
Sbjct: 161 SNEKGEDLSS 170


>At1g41855.1 68414.m04833 hypothetical protein
          Length = 261

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
 Frame = -2

Query: 571 NGLDVGMTVVGDSIIRFH-------VPSALDSSFRSFPSPLGSGEYRFRKRSSLRRYMWA 413
           N L +  T + D ++ +H       +  ALD +FR F +P  + +   +     RR +W 
Sbjct: 99  NHLTIHSTTLLDPLVEYHHSPPIKSLDQALDHTFRVFSNPHSNRQAEHKAEKRRRRSVWK 158

Query: 412 R 410
           R
Sbjct: 159 R 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,304,806
Number of Sequences: 28952
Number of extensions: 320638
Number of successful extensions: 1047
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)