Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1423
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    61   2e-10
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    45   8e-06
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    42   1e-04
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    41   2e-04
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    40   3e-04
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    33   0.036
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    26   4.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   5.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   5.4  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   9.5  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   9.5  

>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 32/81 (39%), Positives = 50/81 (61%)
 Frame = +3

Query: 234 LTGFGGLRPLRYSKNLSRPLVRAEVLIRVKACGLNFQDLIVRQGAIDSAPKTPXILGFEC 413
           ++GF  L+P  Y   + + L   EVL+++KA  LN++DLI+ +G      + P + G + 
Sbjct: 11  ISGFDQLKPEEYE--VPQKLNPGEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVPGSDG 68

Query: 414 AGEIEQVGENVTNFKVGDQVV 476
           AG IE+VGE+V  F+ GD VV
Sbjct: 69  AGIIEKVGEDVEGFEKGDSVV 89


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
 Frame = +3

Query: 270 SKNLSRPLVRAEVLIRVKACGLNFQDLIVRQGAIDSAPKTPXILGFECAGEIEQVGENV- 446
           +K + +P     V+    A GLN+ D  +R G + +AP  P I G E AG +  VG+ V 
Sbjct: 21  TKEIPKPAPNGLVIKNAYA-GLNYIDTYLRTG-LYTAP-LPYIPGKEAAGVVAAVGDKVE 77

Query: 447 TNFKVGDQVVALPEYRAWAE 506
            +FKVGD+VV L  + A+A+
Sbjct: 78  ADFKVGDRVVYLTPFGAYAQ 97


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +3

Query: 303 EVLIRVKACGLNFQDLIV-RQGAI-DSAPKTPXILGFECAGEIEQVGENVTNFKVGDQVV 476
           +V + +KA G+   D+   ++G I D   K P ILG E AG + +VG+ V++ K GD V 
Sbjct: 31  QVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPGDPVA 90

Query: 477 ALPEYRAWAELCLY-RPSTCTRCP 545
             P       LC Y R      CP
Sbjct: 91  VEP--GCVCRLCDYCRSGRYNLCP 112


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 25/60 (41%), Positives = 31/60 (51%)
 Frame = +3

Query: 303 EVLIRVKACGLNFQDLIVRQGAIDSAPKTPXILGFECAGEIEQVGENVTNFKVGDQVVAL 482
           EV I++   G+   D     G  D     P ILG E AG +E VG  VT  +VGD V+AL
Sbjct: 39  EVRIKIVNSGVCHTDAYTLSGK-DPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIAL 97


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 25/80 (31%), Positives = 35/80 (43%)
 Frame = +3

Query: 243 FGGLRPLRYSKNLSRPLVRAEVLIRVKACGLNFQDLIVRQGAIDSAPKTPXILGFECAGE 422
           +G   PL        P    EV ++V    +   D     G +D     P +LG E AG 
Sbjct: 16  WGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSG-VDPEGAFPIVLGHEGAGI 74

Query: 423 IEQVGENVTNFKVGDQVVAL 482
           +E +GE V N + GD V+ L
Sbjct: 75  VESIGEGVINVRPGDHVILL 94


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 303 EVLIRVKACGL-NFQDLIVRQGAIDSAPKTPXILGFECAGEIEQVGENVTNFKVGDQVV 476
           +V+++  AC + +  D  +  G +    K   ILG E  G + + G+ V N ++GD+VV
Sbjct: 63  DVIVKTTACTICSGSDSHIFSGEMPGIEKGA-ILGHESCGIVAEKGDEVNNLEIGDRVV 120


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 444 VTNFKVGDQVVALPEYRAWAELCL 515
           ++NF+ GD    +P ++ W   CL
Sbjct: 348 LSNFREGDSAKNIPTHKLWCTYCL 371


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -3

Query: 331  PQAFTRIRTSALTNGRLRFFEYL 263
            P  F     SALTN  LRFFE L
Sbjct: 1288 PDLFILTYESALTNSGLRFFESL 1310


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -3

Query: 331  PQAFTRIRTSALTNGRLRFFEYL 263
            P  F     SALTN  LRFFE L
Sbjct: 1288 PDLFILTYESALTNSGLRFFESL 1310


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 421 KSSKLAKMSPILRWATKWWLS 483
           +SS L K+ P+LR+  ++WL+
Sbjct: 154 RSSHLLKVRPLLRFLIEFWLN 174


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 399  RXKESSVQSRWRPDELSNL 343
            R KE   Q+RWR +ELSNL
Sbjct: 1260 RFKEE--QARWRQEELSNL 1276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,973
Number of Sequences: 5004
Number of extensions: 44939
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)