Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1422
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    29   0.47 
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    27   1.9  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   3.3  

>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 364 SIKKKTLVLCVVLITIFLNFYLDFIWTLCFSLNSRLILVTTNDSSIP 504
           S+   T  L V++I   + F  D++W +   + S L++      SIP
Sbjct: 255 SLPSTTAGLIVLIINASITFVSDYLWVIAMLMTSPLLVTVGMSLSIP 301


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = +1

Query: 331 LSLKANRDFLSSIKKKT---LVLCVVLITIFLNF 423
           LS K   DFL S+KK +   L++ +V +TI L+F
Sbjct: 5   LSFKPAEDFLRSLKKSSQWFLLIIIVEVTITLSF 38


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 70  WKIHFNYNTRKRRSSCKLTSASVRRDFLNKELETRHGQLSTI 195
           W +  N+N   R+   KL S     D L ++L  R G+ +T+
Sbjct: 547 WVVKSNFNNNLRKLHEKLQSLFASYDKLQEDLSKRLGKKATL 588


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,183
Number of Sequences: 5004
Number of extensions: 46023
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)