Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1422
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0459 + 3546101-3548771,3548871-3549238                           29   2.6  
01_05_0189 + 19075411-19075497,19075603-19075682,19076707-190768...    29   3.4  
03_06_0473 - 34181212-34181430,34181512-34181735,34181812-341819...    28   6.0  

>11_01_0459 + 3546101-3548771,3548871-3549238
          Length = 1012

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -2

Query: 368 IEDKKSRFAFNESQYFCEFCETKCKIKTLIRPDS 267
           ++ +++  ++N+S YFC +    C++KT  RP S
Sbjct: 45  LDPQQALMSWNDSTYFCSWEGVLCRVKTPHRPIS 78


>01_05_0189 +
           19075411-19075497,19075603-19075682,19076707-19076851,
           19077259-19078116,19078664-19078724,19082571-19082680
          Length = 446

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 40  FWLKTLVGDFWKIHF-NYNTRKRRSSCKLTSASVRRDFLNKELETRHG 180
           +WL+ + G+  K+     NT   R+  + TSAS++    + +LET  G
Sbjct: 35  WWLERVEGEEGKVRVVGSNTTTSRAGRRFTSASIKTRHASGDLETEDG 82


>03_06_0473 -
           34181212-34181430,34181512-34181735,34181812-34181973,
           34182071-34182167
          Length = 233

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +2

Query: 2   PVARPPGLG*VRFFGSK--RSLAIFGKYILTTILG 100
           PVARPPG G   F      R + I G +I  T +G
Sbjct: 16  PVARPPGSGHAHFLAGAGVRGVEIAGNFIKFTAIG 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,124,550
Number of Sequences: 37544
Number of extensions: 277839
Number of successful extensions: 692
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)