Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1422
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)              29   4.6  
SB_47519| Best HMM Match : rve (HMM E-Value=4.3e-09)                   28   6.1  

>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
          Length = 1019

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
 Frame = +1

Query: 382 LVLCVVLITIFLNF-YLDFIWTLCFSLNS---------RLIL-VTTNDSSIPFQNSRLAD 528
           L++C +L+ +F  + YL ++  + F+L S          LIL +      IP  N  L  
Sbjct: 81  LLICGLLLLLFYFYKYLVYVIIVLFALASCNGLFDCLMPLILWLPLGSCKIPANNLPLLK 140

Query: 529 KLYELRRLLHMTH*VKQSKWWTVRRNTS 612
           K  E+R ++     +  S WW + RN S
Sbjct: 141 KQPEVRLIVLALFCMGMSIWWGIERNAS 168


>SB_47519| Best HMM Match : rve (HMM E-Value=4.3e-09)
          Length = 321

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 448 CFSLNSRLILVTTNDSSIPFQ---NSRLADKLYELRRLLHMTH*VKQSKWWTVRRNTSVS 618
           C S NS     +  D S+  Q   +  LAD+ +   R  ++ H V++SKW  ++RN    
Sbjct: 203 CASTNSAPGEFSERDMSLRRQWRHSQYLADQFWRQWRREYVPHLVQRSKWRAIQRNLRRG 262

Query: 619 D 621
           D
Sbjct: 263 D 263


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,619,908
Number of Sequences: 59808
Number of extensions: 334534
Number of successful extensions: 864
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)