Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1422
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81550-5|CAB04479.1|  881|Caenorhabditis elegans Hypothetical pr...    31   0.77 
AF101305-4|AAR85910.1|  342|Caenorhabditis elegans Serpentine re...    30   1.3  

>Z81550-5|CAB04479.1|  881|Caenorhabditis elegans Hypothetical
           protein F55F3.4 protein.
          Length = 881

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = -2

Query: 527 SANLEFWNGIEESLVVTRIKREFSEKHNVQIXXXXXXXKIVINTTQSTKVFFLIEDKKSR 348
           +A +  WN   + L V  IK  F++KH  ++        +  N+T    +FF I  K +R
Sbjct: 737 AAPILLWN---KKLTVANIK--FTKKHYHELEHLAVLESVKCNSTAMKTLFFSIRSKNAR 791

Query: 347 FAFNESQYFCEFCETK 300
                 +   EFC+ K
Sbjct: 792 GKIIVDKALNEFCDGK 807


>AF101305-4|AAR85910.1|  342|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 2 protein.
          Length = 342

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +1

Query: 343 ANRDFLSSIKKKTLVLCVVLITIFLNFYLDFIWTLCFSLNSRLILVTTNDSSIPFQNSRL 522
           A   FL ++   T  LC+  I   LNF    I       NS+ I VT N S +   + R+
Sbjct: 15  ATSSFLRTVLSTTTFLCICCIPFCLNFAWLIIHETRLHFNSKCIFVTFNISVLVHVSVRI 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,086,910
Number of Sequences: 27780
Number of extensions: 257788
Number of successful extensions: 769
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)