Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1422
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      42   7e-06
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      42   7e-06
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          35   6e-04
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   4.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   4.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 41.5 bits (93), Expect = 7e-06
 Identities = 19/23 (82%), Positives = 19/23 (82%)
 Frame = +3

Query: 585 MVDSQTQHFCLRWNNYQRIITSA 653
           MVD  TQHFCLRWNNYQ  ITSA
Sbjct: 1   MVD--TQHFCLRWNNYQSSITSA 21


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 41.5 bits (93), Expect = 7e-06
 Identities = 19/23 (82%), Positives = 19/23 (82%)
 Frame = +3

Query: 585 MVDSQTQHFCLRWNNYQRIITSA 653
           MVD  TQHFCLRWNNYQ  ITSA
Sbjct: 1   MVD--TQHFCLRWNNYQSSITSA 21


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 35.1 bits (77), Expect = 6e-04
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 603 QHFCLRWNNYQRIITSALRE 662
           QH+CLRWNNYQ  +TS   +
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQ 28


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 349 GSLLMKVNIFVNSVKRNAKLKL*Y 278
           G  +++VN+FV S+   + +K+ Y
Sbjct: 57  GPAIVRVNLFVRSIATISDIKMEY 80


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 367 IKKKTLVLCVVLITIFLNFYLDF 435
           I KKT+   + ++ +FL F++ F
Sbjct: 222 ILKKTVCFVIPIMLLFLAFFVSF 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,287
Number of Sequences: 438
Number of extensions: 3340
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)