Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1422
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger) fa...    30   1.6  
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin...    29   2.9  
At1g77580.2 68414.m09032 myosin heavy chain-related low similari...    28   6.6  
At1g77580.1 68414.m09033 myosin heavy chain-related low similari...    28   6.6  
At1g61540.1 68414.m06933 kelch repeat-containing F-box family pr...    28   6.6  
At1g53100.1 68414.m06013 glycosyltransferase family 14 protein /...    27   8.8  

>At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|Q06003 Goliath
           protein (G1 protein) {Drosophila melanogaster}; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 381

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/86 (24%), Positives = 45/86 (52%)
 Frame = +1

Query: 427 LDFIWTLCFSLNSRLILVTTNDSSIPFQNSRLADKLYELRRLLHMTH*VKQSKWWTVRRN 606
           LDF+W L F + +  +LV ++D + P    R+    Y L+ ++HM     + +    RR 
Sbjct: 77  LDFVWNLAFVVVATAVLVLSSDEN-PNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRR 135

Query: 607 TSVSDGTTTSALLPAPFENLRDDQGL 684
             +S  +++S+   +   ++ +++GL
Sbjct: 136 RDLSPRSSSSS--SSSSSSMDEEEGL 159


>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
           (CCCH type) family protein contains Pfam domains
           PF00013: KH domain and PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 240

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 17  PGLG*VRFFGSKRSLAIFGKYILTTILGKGGLPASSQARQYVAIF*IKNSKR 172
           PG G V  FG+  S       +   I+GKGG+ +    R+  A   IK+ +R
Sbjct: 103 PGSGPVSIFGASTSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHER 154


>At1g77580.2 68414.m09032 myosin heavy chain-related low similarity
           to SP|P08799 Myosin II heavy chain, non muscle
           {Dictyostelium discoideum}
          Length = 779

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 395 TQSTKVFFLIED-KKSRFAFNESQYFCEFCETKCKI 291
           T+S K+  L ED +K RFAF+E +  CE  E +  +
Sbjct: 602 TKSAKIESLEEDMRKERFAFDELRRKCEALEEEISL 637


>At1g77580.1 68414.m09033 myosin heavy chain-related low similarity
           to SP|P08799 Myosin II heavy chain, non muscle
           {Dictyostelium discoideum}
          Length = 629

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 395 TQSTKVFFLIED-KKSRFAFNESQYFCEFCETKCKI 291
           T+S K+  L ED +K RFAF+E +  CE  E +  +
Sbjct: 568 TKSAKIESLEEDMRKERFAFDELRRKCEALEEEISL 603


>At1g61540.1 68414.m06933 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 402

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +1

Query: 448 CFSLNSRLILVTTNDSSIPFQNSRLADKLYELRRLLHMT 564
           CFSL SRL   T +  S  F++   + +LYE+R  L+ T
Sbjct: 38  CFSLVSRLYYPTLSLVSKTFRSIITSRELYEIRSRLNRT 76


>At1g53100.1 68414.m06013 glycosyltransferase family 14 protein /
           core-2/I-branching enzyme family protein contains Pfam
           profile: PF02485 Core-2/I-Branching enzyme
          Length = 406

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = +1

Query: 379 TLVLCVVLITIFLNFYLDFIWTLCFSLNSRLILVTTNDSSIPFQNSRLADKLYELRRLLH 558
           T ++CVVL+    +F +  + +L   +N  L     NDS++  +  R  DKL     L+ 
Sbjct: 12  TSLVCVVLLAT--SFNIGLMSSLRPPINGTLSSFPKNDSNVVGKQPREDDKLPRFAYLVS 69

Query: 559 MTH*VKQSKWWTVR 600
            +    +S W T+R
Sbjct: 70  GSKGDLESLWRTLR 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,096,220
Number of Sequences: 28952
Number of extensions: 233073
Number of successful extensions: 608
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)