Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1420
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    27   2.8  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    27   3.7  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   3.7  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   4.8  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    26   6.4  
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    26   6.4  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   8.5  

>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 483 DKCGKEFNEWLVSVDTRSSM-QYVSMQYLK 569
           D C  EFNEW   V+    + +Y S++Y++
Sbjct: 470 DICPDEFNEWKDPVEAEKDIFRYFSLEYIE 499


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 116 MIGVTGVDSLGNTKIEISV 60
           MIG++GV  LGNT + +S+
Sbjct: 280 MIGLSGVHQLGNTSLAVSL 298


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
 Frame = +1

Query: 25  IIKYNIEANIILTDISILVLPRLST-PVTPI-------INNILFGDKIDLESQSNGSDHK 180
           I++  IEA  I  + ++LV+P   T  VT I       I++ + GD++ L  + + SD +
Sbjct: 483 ILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDDSDVQ 542

Query: 181 TGQCIEKYEN 210
           TG  +   +N
Sbjct: 543 TGYVLTSTKN 552


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +1

Query: 10  TTPVNIIKYNIEANIILT---DISILVLPRLSTPVTPIINN 123
           T  VN++++N E NI+ T   + +I++    +TP+T + ++
Sbjct: 67  TQAVNVVRFNPEGNILATAGDEGTIMLWVPTNTPITTLADD 107


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 420 SSASVS*ALSYP*ISSYIPYRNNFL 346
           SS S+S +L+YP I   +P +N FL
Sbjct: 495 SSNSLSTSLTYPLIEIILPIKNGFL 519


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -3

Query: 667 SNFQCRKSTLCFLRGC-SFKCYVYLQKITLN*RDFKYCIETYCML 536
           S F CR  TL    GC SF  Y  +  I+L        + + C+L
Sbjct: 130 SRFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSICLL 174


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 674 YIFEFSMSKEYIVFFKGMFIQMLRLLTKNHIK 579
           ++F F    EY+V+FK    + L+L  K  +K
Sbjct: 61  FLFSFQNDNEYLVWFKKHLNERLQLCPKCIVK 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,838
Number of Sequences: 5004
Number of extensions: 55097
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)