Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1420
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0733 + 27639581-27641257                                         31   0.95 
03_06_0092 + 31589665-31589807,31590111-31590243,31590316-31590546     29   2.9  
02_05_0201 + 26687369-26689228                                         28   6.7  
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037...    28   8.8  

>04_04_0733 + 27639581-27641257
          Length = 558

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 423 HRYTIK-NPNKDDHRYKRRICDKCGKEFNEW 512
           H Y ++ NPN+      R++C  CGKEF  W
Sbjct: 95  HVYELRTNPNRVTR--SRQVCKNCGKEFTSW 123


>03_06_0092 + 31589665-31589807,31590111-31590243,31590316-31590546
          Length = 168

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 217 LRRFHISQCIDRFCGRFRCSEIL 149
           L +FH S C  RFCGR++ S ++
Sbjct: 124 LLQFHGSHCSPRFCGRYQLSAMM 146


>02_05_0201 + 26687369-26689228
          Length = 619

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 474 RICDKCGKEFNEWLVSVD 527
           R C+ CGKEF  W   +D
Sbjct: 118 RTCENCGKEFTSWKTLLD 135


>02_01_0138 +
           999809-999821,1000456-1001341,1001424-1003221,
           1003716-1003805,1004034-1004111,1004513-1004518,
           1004849-1004958,1005174-1005369
          Length = 1058

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 244 RIPLKFLYSLRRFHISQCID-RFC-GRFRCSEILNLFYLQIKYC 119
           +IP   L+SL    IS+C D  FC G    +   +L  LQIK C
Sbjct: 565 QIPCSLLHSLMWLSISECPDLEFCGGSGGFAGFTSLVQLQIKNC 608


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,550,226
Number of Sequences: 37544
Number of extensions: 279400
Number of successful extensions: 707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)