Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1420
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25397| Best HMM Match : zf-C2H2 (HMM E-Value=0.38)                  32   0.42 
SB_52268| Best HMM Match : SecA_PP_bind (HMM E-Value=0.33)             29   3.9  
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           29   3.9  
SB_42304| Best HMM Match : NHL (HMM E-Value=0)                         28   6.8  
SB_18190| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_25397| Best HMM Match : zf-C2H2 (HMM E-Value=0.38)
          Length = 283

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 399 LRIHSRKIHRYTIKNPNKDDHRYKRRICDKCGKEF 503
           LR H    H     +P  DD + KR  CD CGKEF
Sbjct: 220 LRFHVEDEHSELDSSP--DDPQGKRNFCDHCGKEF 252


>SB_52268| Best HMM Match : SecA_PP_bind (HMM E-Value=0.33)
          Length = 774

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 106 TPIINNILFGDKIDLESQSNGSDH-KTGQCIE 198
           TP ++ ++ G K D+E Q  G DH +  +C+E
Sbjct: 299 TPSLDVVITGQKQDIEMQEPGMDHVEASECME 330


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 438  KNPNKDDHRYKRRICDKCGKEFNE 509
            +NP K+D R     CD C K F E
Sbjct: 994  QNPAKEDPRANENYCDHCDKTFEE 1017


>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
          Length = 1279

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 31  KYNIEANIILTDISILVLPRLSTPVTP--IINNILFGD 138
           K  IEA+ +    S  V  RL TP+TP   +NN LFG+
Sbjct: 583 KVIIEADEVDFFFSFTVYWRLKTPITPTEFVNNDLFGN 620


>SB_18190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 115 INNILFGDKIDLESQSNGSDHK 180
           I ++LFG+K D+E +S+G + K
Sbjct: 30  IKDVLFGEKEDMEDESDGEEGK 51


>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +3

Query: 609 HLNEHPLKKHNVL 647
           HLNEHP KK+N+L
Sbjct: 503 HLNEHPDKKYNIL 515


>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 548 ILHAASCVYRNEPFIEFFATFIAYPSLVSVIVFIRILNCVTMNLPRVY 405
           +LHAAS +Y+ E    F+     +PSL+ +I +  I   V   L   Y
Sbjct: 269 LLHAASVIYQKEGIRSFYRGL--FPSLLGIIPYAGIDLAVYETLKNFY 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,458,733
Number of Sequences: 59808
Number of extensions: 369426
Number of successful extensions: 2896
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2896
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)