Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1420
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    31   0.85 
AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical ...    30   1.5  
X86403-1|CAA60157.1|  575|Caenorhabditis elegans nicotinic acety...    29   2.6  
U23525-1|AAK71377.1|  575|Caenorhabditis elegans Acetylcholine r...    29   2.6  
AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF068709-15|AAC19246.2|  317|Caenorhabditis elegans Serpentine r...    29   4.5  
AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical ...    29   4.5  

>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 12/49 (24%)
 Frame = -2

Query: 527 VYRNEPFIEFFATFIAYPSLVS--------VIVFIRI----LNCVTMNL 417
           VY+NEPF E F +FI  PS  +        V++F++I    LNC+ + +
Sbjct: 162 VYKNEPFTEGFYSFILVPSTTASQINMYFFVLLFVKIFNLLLNCILLRI 210


>AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.10 protein.
          Length = 976

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 396 ALRIHSRKIHRYT--IKNPNKDDHRYKRRICDKCGKEFNE 509
           +L  H R  H  T  +K P K    YKR +C  C +EF +
Sbjct: 418 SLTAHKRACHLRTDTLKIPTKPLPIYKRHVCKTCKREFRD 457


>X86403-1|CAA60157.1|  575|Caenorhabditis elegans nicotinic
           acetylcholine receptor protein.
          Length = 575

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 258 SNFNLDDENSMIDANKNTDVAKSMNE 335
           S+ N+DD N+  D NKN+D   +M E
Sbjct: 33  SHTNIDDPNNSSDPNKNSDQGDTMGE 58


>U23525-1|AAK71377.1|  575|Caenorhabditis elegans Acetylcholine
           receptor protein 2 protein.
          Length = 575

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 258 SNFNLDDENSMIDANKNTDVAKSMNE 335
           S+ N+DD N+  D NKN+D   +M E
Sbjct: 33  SHTNIDDPNNSSDPNKNSDQGDTMGE 58


>AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical
           protein Y32B12B.2 protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 308 VFICIYHAXXXXXXXXXXXILKNSSKISIFPSTFSYFSMH 189
           +F CI+HA             K+S +  IF ST++ F +H
Sbjct: 365 LFKCIFHAQMTSSWSMESKKEKSSKRRPIFESTYTKFQLH 404


>AF068709-15|AAC19246.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 62 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 412 ECILSAFISLNFFLHSLQKQFSKSNNSFIDFATSVF 305
           E I S   SLN F H L   F K N + + FA+ +F
Sbjct: 244 EVIWSVLNSLNSFFHFLPPFFVKLNTNLLVFASDMF 279


>AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK6.2 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 363 YRNNFLNRTIRSLISRHQCFYLHLSCCFRRLN*NLSFH 250
           YRNNF N +I  +I  ++  Y+ +S  F+  + + +FH
Sbjct: 112 YRNNFSNPSIEEVIRMNKIDYVQISNNFQMSHKHWAFH 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,954,787
Number of Sequences: 27780
Number of extensions: 300336
Number of successful extensions: 904
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)