Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1418
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    27   3.2  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    26   4.2  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   5.6  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    25   7.4  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    25   7.4  

>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 412 IRTISAFYEQLYGKSLESDLKGDTSGHFKRLCGRCAW-PIAMKTRASM 552
           ++ + AF+E+   + + S  KGD S  F+ L     + P+ + T+A +
Sbjct: 472 LKKLDAFHEEKLREKINSSDKGDVSYEFELLKDETVFSPLKLPTKAQL 519


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 508 GRCAWPIAMKTRASMKAQLKPMLKH 582
           GRC W +  K     KA+  P L H
Sbjct: 64  GRCVWNVLNKGTRFFKAEFNPSLVH 88


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 429  ILRTTVRQEPGIGLKRRHVG 488
            ++ T +  +PG  LK+RH+G
Sbjct: 1171 MMPTNIEHDPGCTLKKRHIG 1190


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 339 RCCLRNWNRRI-SHHRDPVHAFQLWYPYHIRILRTTVRQEPGI 464
           +C  +  N RI + +RDP    +LW P  +R L   ++ EP +
Sbjct: 728 KCIPQLLNARILASNRDPAKVNELWEPI-LRKLLDHIQNEPSV 769


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 490 HFKRLCGRCAWPIAMKTRASMKAQLKPMLKHWPPLVK 600
           H  R C +C W + +  R ++ A    + K +  L K
Sbjct: 157 HINRKCEKCGWGLPLLERNTLYAAKASIQKRYERLTK 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,569
Number of Sequences: 5004
Number of extensions: 47002
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)