Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1417
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    99   3e-22
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    37   0.003
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    30   0.40 
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    26   4.9  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   6.5  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   8.6  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   8.6  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   8.6  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    25   8.6  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    25   8.6  

>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score =   99 bits (238), Expect = 3e-22
 Identities = 43/89 (48%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
 Frame = +3

Query: 258 RDVGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPALKSDGWETEPFEL-VER 434
           RD+G+  +DG+DV           NDP K TV IY H DVQPA   DGW T+PF L V+ 
Sbjct: 61  RDIGYHQMDGQDVPLPPIVLGQYGNDPSKKTVLIYNHFDVQPASLEDGWSTDPFTLTVDN 120

Query: 435 NEKLYGRGSTDDKGPVLGWLHTINAIRAL 521
             +++GRG+TDDKGP++GW+  I A + L
Sbjct: 121 KGRMFGRGATDDKGPLIGWISAIEAHKEL 149



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 31/77 (40%), Positives = 45/77 (58%)
 Frame = +2

Query: 485 WLAAYHQCYKGTGAELPVNLKFIFECMEESGSEGLDSLLMDKLKPEGFFDSVDYVCISR* 664
           W++A  + +K  G + PVNL   FE MEE GSEGL+ L+  + + E +F   D VCIS  
Sbjct: 139 WISAI-EAHKELGIDFPVNLLMCFEGMEEYGSEGLEDLI--RAEAEKYFAKADCVCISDT 195

Query: 665 LLVGNHEAMXPYGLRRI 715
             +G  + +  YGLR +
Sbjct: 196 YWLGTKKPVLTYGLRGV 212



 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 18/55 (32%), Positives = 33/55 (60%)
 Frame = +1

Query: 82  TLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVGA 246
           +L ++++ +D+ KD +   L  AV+IPSVS DV  R   + M  ++  +  ++GA
Sbjct: 2   SLDKLYEVIDKKKDEFVTRLSRAVSIPSVSADVTLRPKVVEMADFVVSEFTKLGA 56


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 357 IYGHLDVQPALKS--DGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHTINAI 512
           + GH DV P  ++  D W   PF     N  +Y RG+ DDK  V+  L  +  +
Sbjct: 194 LMGHQDVVPVNQASLDRWYFPPFSATYHNGHVYSRGAADDKNSVVAILEALEIL 247


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 584 GLDSLLMDKLKPEGFFDSVDYVCISR*LLVGNHE 685
           G  +L +   + E FFDS+ Y+  +  LLVG+HE
Sbjct: 49  GSVNLNLQDRENEYFFDSIQYIIYTSELLVGDHE 82


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 384 QVVHPNDHRYKLYFFLDHYPIR 319
           ++V P D   + YFFL HY I+
Sbjct: 295 EMVEPFDEWEEFYFFLQHYSIQ 316


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -2

Query: 399 HQISMQVVHPNDHRYKLYFFLDHYPIRLLKLAAVERLCHLLFESQHPLICSGSDFLQFV 223
           H+I+M +V       ++ F   +   R + L  +E L   +F+S HPL  S +  LQ +
Sbjct: 381 HEINMLLVDLLLEPLQVAFVYKNLARRWISLEEIENLWLKVFDSSHPLGKSITSTLQAI 439


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 538 DRQLSTSALIALMVCSQPSTGPLSSVEPLPYNFSLRST 425
           +R  S++ L + +  S  S  PL S+EP P N +L ++
Sbjct: 805 ERNASSNLLNSSLFSSFNSVNPLISLEPNPLNRTLNNS 842


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 373 MYNLH*NLMDGRLNLLN*LSAMKNYMEEVLLM 468
           +YN + N    RLN      A+KNYMEE+ L+
Sbjct: 435 LYNFNGNANPSRLN-----PALKNYMEELKLL 461


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 441 FHCAQLVQKVQSPIHQISMQVVHPNDHR 358
           FH +  +  +   IH+I +Q VH  DH+
Sbjct: 796 FHWSGDLINIADGIHEIKLQRVHSQDHQ 823


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 454 LPYNFSLRSTSSKGSVSHPSDFNAGCTSK*P*IQTVFFF 338
           L Y   L ST+ + S+S  S FN   + +   I+T+ FF
Sbjct: 406 LRYTNDLASTNKRFSLSEASSFNVWSSVRKRAIETIEFF 444


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 336 PKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKL 446
           P    + I    DV+P LKS   +  P E   R EKL
Sbjct: 311 PLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKL 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,306,288
Number of Sequences: 5004
Number of extensions: 70647
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)