Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1417
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827...    36   0.026
06_02_0117 - 12027116-12027401,12029770-12030149                       31   0.73 
06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016           31   0.73 
07_03_0153 - 14481421-14481506,14481933-14482111,14483046-144831...    31   0.96 
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159...    29   5.1  
02_05_0287 - 27525722-27525812,27525927-27526057,27526945-275270...    29   5.1  
11_06_0087 - 19919224-19922304                                         28   9.0  

>02_05_0374 +
           28381456-28381785,28382302-28382555,28382665-28382773,
           28383272-28383410,28383525-28383582,28384179-28384196,
           28384301-28384423,28384483-28384681,28384763-28384796,
           28385044-28385153
          Length = 457

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 366 HLDVQPALKSDGWETEPFELV---ERNEKLYGRGSTDDKGPV 482
           H+DV PA   D W+ +PF L    E  +KL GRG+TD  G V
Sbjct: 99  HMDVVPA-NPDEWDFDPFSLTFDSEDKDKLRGRGTTDCLGHV 139


>06_02_0117 - 12027116-12027401,12029770-12030149
          Length = 221

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = +3

Query: 207 GSLDARQIEGSRS--HYRLRDVGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQ 380
           G+ DAR   G+      R R +G     G+  Q           DPK  T  IY  +D  
Sbjct: 94  GATDARDASGALGVEQLRRRCLGGGAPRGRHRQRREAVPRREEKDPKTATTHIYATIDAI 153

Query: 381 PALKSDGWETEPFELVERNEKLYGRGSTDDKG 476
           PAL  DG     F L++  +K Y    TDD G
Sbjct: 154 PAL-FDG-----FPLLKGVDKPYCFEDTDDGG 179


>06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016
          Length = 441

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 333 DPKKNTVCIYGHLDVQPALKSDGWETEPFELVE--RNEKLYGRGSTDDKGPVLGWLHTIN 506
           DP   ++ +  HLD  PA + + W   PF         ++Y RG+ DDK   + +L  I 
Sbjct: 99  DPSLPSLLLNSHLDSVPA-EPEQWLHPPFAAHRDAATGRVYARGAQDDKCLPIQYLEAIR 157

Query: 507 AIR 515
            +R
Sbjct: 158 GLR 160


>07_03_0153 -
           14481421-14481506,14481933-14482111,14483046-14483130,
           14483301-14483499,14484222-14484292,14484380-14484486,
           14484571-14484703,14484870-14485020,14485147-14485249,
           14485330-14485438,14485587-14485746,14486293-14486394,
           14486892-14487009,14487596-14487750,14487850-14487948,
           14488078-14488167
          Length = 648

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
 Frame = -2

Query: 432 AQLVQKVQSPIHQISMQVVHPNDHRY-------KLYFF---LDHYPIRLLKLAAVERLCH 283
           AQLV+K++S + +IS   +HP            KL +F   L   P + LK  + + + +
Sbjct: 511 AQLVKKLESGVREISSISIHPGGDNVIVGSKDGKLCWFDTDLSTRPYKTLKNHSKD-ITN 569

Query: 282 LLFESQHPLICSGS-DFLQFVLHPVNHTD 199
           + F  ++PL  S S D   +V H + ++D
Sbjct: 570 VTFHRKYPLFASSSEDCTAYVFHGMVYSD 598


>10_08_1042 -
           22515298-22515354,22515614-22515709,22515806-22515988,
           22516277-22516365,22516481-22516722,22517008-22518116
          Length = 591

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -2

Query: 423 VQKVQSPIHQISMQVVHPNDHRYKLYFFLDHYPIRLLKLAAVERLCHLLFESQHPLICSG 244
           V  +++P H I   + + N H Y  +      P R+    A E  CH L E    ++ SG
Sbjct: 415 VDDIKNPQHYIVWDM-NVNSHIYSEFVVTIKLPSRVKDSPATEEDCHNLSEVSSLILSSG 473

Query: 243 S 241
           S
Sbjct: 474 S 474


>02_05_0287 -
           27525722-27525812,27525927-27526057,27526945-27527022,
           27527080-27527186,27527302-27527380,27528001-27528096,
           27528192-27528443,27528691-27528840,27528953-27529277,
           27529373-27529584
          Length = 506

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 494 AYHQCYKGTGAELPVNLKFIFECMEESGSEGLD--SLLMDKLKPE 622
           AYH+C KG    + V  K + E MEE G +  D   +L+++L  E
Sbjct: 223 AYHECMKGRRNAMKVLKKMMRERMEEPGRQCEDFFDVLIEELGRE 267


>11_06_0087 - 19919224-19922304
          Length = 1026

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 507 AIRALVLSCLSI*SSFSNVWRNLVPKGLT 593
           ++ AL LS  S+ SS +  WR L+P+ LT
Sbjct: 224 SLTALHLSSCSLPSSSTQQWRRLLPRNLT 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,398,616
Number of Sequences: 37544
Number of extensions: 423762
Number of successful extensions: 922
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)