Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1417
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9197| Best HMM Match : ITAM (HMM E-Value=4.2)                       42   7e-04
SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)         36   0.026
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_56221| Best HMM Match : AOX (HMM E-Value=3.6)                       29   4.0  
SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)                   28   6.9  
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_6120| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  

>SB_9197| Best HMM Match : ITAM (HMM E-Value=4.2)
          Length = 75

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 342 KNTVCIYGHLDVQPALKSDGWET--EPFELVERNEKLYGRGSTDDKGPVLGWLHTINAIR 515
           ++TV +YGHLD QP  +  GW     P+     + KLYGRG  DD   V   L  I A+ 
Sbjct: 15  RDTVLLYGHLDKQP--EFSGWRAGLGPWTPKYEDGKLYGRGGADDGYAVYASLTAIMALE 72

Query: 516 ALV 524
            ++
Sbjct: 73  GIL 75


>SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)
          Length = 702

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = +3

Query: 357 IYGHLDVQPALKSDGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHTINAIRAL 521
           I  HLDV PA  S  W+  PF+   ++  ++GRG+ D K  V+  L  + A+  L
Sbjct: 464 IASHLDVVPAPGS--WDVPPFDGRVKDGYIWGRGTLDVKNGVMASLEAVQALLKL 516


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
 Frame = -1

Query: 493  SQPSTGPLSSVEPLPYNFSLRSTSSKGSVSHPSDFNAGCTSK*P*IQTVFFFGSLPNTPT 314
            S PST    +    P   S+ ST S  S   PS  +   T   P   +     S P+TP 
Sbjct: 818  STPSTPCTPNTPSTPSTPSMPSTPSTPST--PSTPSTPSTPSAPSTPSTPSTPSTPSTPK 875

Query: 313  KTGGS*T-SLPSIV*KPTSLNL*WLRLPSICLASSEPYGCNPHDI 182
                  T + PS   K TSL +       +     EP+ CNP D+
Sbjct: 876  TPSTPCTPNTPSTNRKSTSLGMQENIANFLNACQEEPFNCNPQDL 920


>SB_56221| Best HMM Match : AOX (HMM E-Value=3.6)
          Length = 361

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +1

Query: 37  SVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCD 177
           S SSK VS++ AT  TLPE+ + +D   D+  + +  A+ I S   D
Sbjct: 18  SRSSKDVSSRRATTVTLPEL-RAMDDLADAADRRVAHALPIASSESD 63


>SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)
          Length = 233

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 638 VDYVCISR*LLVGNHEAMXPYGLRRISSIF 727
           VDYVCIS    +G  +    YGLR I   F
Sbjct: 137 VDYVCISDNYWLGKEKPCITYGLRGICYFF 166



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/47 (34%), Positives = 30/47 (63%)
 Frame = +1

Query: 94  IFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLK 234
           IF +V  +++ Y + L +AVAI SVS   + R +  +MV+ + +K++
Sbjct: 36  IFVFV-YSQELYIKRLADAVAIKSVSAWPETRGEITKMVNHVAEKIR 81


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 4    VPFFPAYHQHYSV-SSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCD 177
            VP   A  + + V SSK VS + AT  TLPE+ + +D   D+  + +   + I S   D
Sbjct: 1668 VPLLAALRRCFVVASSKDVSPRRATTVTLPEL-RAMDDLADAADRRVAHVLPIASSESD 1725


>SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 538  DRQLSTSALIA-LMVCSQPSTGPLSSV 461
            DR+L TS ++   ++CS P TG LSS+
Sbjct: 965  DRRLMTSLMVLHTVMCSAPMTGQLSSI 991


>SB_6120| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +1

Query: 4   VPFFPAYHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCD 177
           +P  P+     S SSK VS + AT  TLPE+ + +D   D+  + +   + I S   D
Sbjct: 8   IPCRPSDVASSSRSSKDVSPRRATTVTLPEL-RAMDDLADAADRRVAHVLPIASSESD 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,812,519
Number of Sequences: 59808
Number of extensions: 498823
Number of successful extensions: 1223
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)