Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1417
(742 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93386-5|CAB07646.1| 473|Caenorhabditis elegans Hypothetical pr... 120 1e-27
AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical ... 101 5e-22
Z68214-4|CAA92447.1| 397|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z68214-5|CAA92446.2| 397|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z68214-3|CAA92445.1| 399|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z66521-11|CAA91398.2| 471|Caenorhabditis elegans Hypothetical p... 29 4.6
AC024881-9|AAK71410.1| 588|Caenorhabditis elegans Hypothetical ... 29 4.6
AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like ... 29 4.6
AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine r... 28 8.0
>Z93386-5|CAB07646.1| 473|Caenorhabditis elegans Hypothetical
protein R11H6.1 protein.
Length = 473
Score = 120 bits (288), Expect = 1e-27
Identities = 63/147 (42%), Positives = 84/147 (57%), Gaps = 1/147 (0%)
Frame = +3
Query: 255 LRDVGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPALKSDGWETEPFELVER 434
L D+G Q ++GK V+ +D K T+ +YGHLDVQPA KSDGW+TEPFELVE+
Sbjct: 62 LADLGTQELEGKTVKLPPVLLGTLGSDKNKKTLLVYGHLDVQPAAKSDGWDTEPFELVEK 121
Query: 435 NEKLYGRGSTDDKGPVLGWLHTINAIRALVLSCLSI*SSFSNVWRNLVPKGLTAY*WTN* 614
+ KL+GRGS+DDKGPVL W H AIRA + + + + + G
Sbjct: 122 DGKLFGRGSSDDKGPVLCWFH---AIRAAQKNGIDLPVNIKFCLEGMEESGSVGLPELLE 178
Query: 615 NLRDSLIV*TMYV-YPDNYWLGTTKPC 692
+D + +V D+YWLGT KPC
Sbjct: 179 REKDRFLAGVDFVCISDSYWLGTKKPC 205
Score = 60.9 bits (141), Expect = 9e-10
Identities = 30/70 (42%), Positives = 45/70 (64%)
Frame = +1
Query: 85 LPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVGATTD*GM 264
L +F+ +D + D+ K+LL+EAVAI SVS D R + IRMVHWM++KL+ +G +
Sbjct: 5 LTNVFQQIDGDYDNLKELLREAVAIQSVSGDPSKRDETIRMVHWMKEKLETIGTICELAD 64
Query: 265 LAFKQ*MAKT 294
L ++ KT
Sbjct: 65 LGTQELEGKT 74
Score = 60.9 bits (141), Expect = 9e-10
Identities = 36/81 (44%), Positives = 44/81 (54%)
Frame = +2
Query: 485 WLAAYHQCYKGTGAELPVNLKFIFECMEESGSEGLDSLLMDKLKPEGFFDSVDYVCISR* 664
W A K G +LPVN+KF E MEESGS GL LL + + + F VD+VCIS
Sbjct: 140 WFHAIRAAQKN-GIDLPVNIKFCLEGMEESGSVGLPELL--EREKDRFLAGVDFVCISDS 196
Query: 665 LLVGNHEAMXPYGLRRISSIF 727
+G + YGLR I S F
Sbjct: 197 YWLGTKKPCLTYGLRGICSFF 217
>AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical
protein Y71H2AM.11 protein.
Length = 472
Score = 101 bits (242), Expect = 5e-22
Identities = 60/148 (40%), Positives = 76/148 (51%), Gaps = 2/148 (1%)
Frame = +3
Query: 255 LRDVGFQTI-DGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPALKSDGWETEPFELVE 431
L ++G QT+ G+ + D K T+ IYGHLDVQPA K DGW T PFEL E
Sbjct: 61 LWELGQQTLPSGEQLPLPPAVFGVYGRDKSKKTLLIYGHLDVQPAEKEDGWNTNPFELTE 120
Query: 432 RNEKLYGRGSTDDKGPVLGWLHTINAIRALVLSCLSI*SSF-SNVWRNLVPKGLTAY*WT 608
+ KL+GRGSTDDKGPV+ W+ + ++ L + L I F +GL
Sbjct: 121 IDGKLFGRGSTDDKGPVIAWIAVLKVLQTLGID-LPINIKFVLECMEESSSEGLDKGLED 179
Query: 609 N*NLRDSLIV*TMYVYPDNYWLGTTKPC 692
N D + T DNYWLG KPC
Sbjct: 180 N---IDKISDVTFSCISDNYWLGRNKPC 204
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/53 (47%), Positives = 36/53 (67%)
Frame = +1
Query: 94 IFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVGATT 252
+FK +D+ +D + LL+E+VAI SVS D R DC+RM W +D+LK +G T
Sbjct: 7 VFKSIDERQDEFIDLLRESVAIQSVSADPARRGDCVRMSEWARDQLKTLGVET 59
Score = 58.4 bits (135), Expect = 5e-09
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = +2
Query: 485 WLAAYHQCYKGTGAELPVNLKFIFECMEESGSEGLDSLLMDKLKPEGFFDSVDYVCISR* 664
W+A + + G +LP+N+KF+ ECMEES SEGLD L D + V + CIS
Sbjct: 140 WIAVL-KVLQTLGIDLPINIKFVLECMEESSSEGLDKGLEDNIDK---ISDVTFSCISDN 195
Query: 665 LLVGNHEAMXPYGLRRISSIF 727
+G ++ YGLR I F
Sbjct: 196 YWLGRNKPCLTYGLRGICYYF 216
>Z68214-4|CAA92447.1| 397|Caenorhabditis elegans Hypothetical
protein C10C5.4 protein.
Length = 397
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +3
Query: 330 NDPKKNTVCIYGHLDVQPALKSDGWETEPFE-LVERNEKLYGRGSTDDKGPVLGWLHTIN 506
+ P+ ++ +Y H DV P + + W +P+ + + ++ RG+ D K LG H +
Sbjct: 63 SQPELPSIMLYSHTDVVPTFR-EHWTHDPYSAFKDEDGNIFARGAQDTK--CLGVQH-VE 118
Query: 507 AIRAL 521
A R L
Sbjct: 119 AFRNL 123
>Z68214-5|CAA92446.2| 397|Caenorhabditis elegans Hypothetical
protein C10C5.5 protein.
Length = 397
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 330 NDPKKNTVCIYGHLDVQPALKSDGWETEPFE-LVERNEKLYGRGSTDDK 473
+ P+ ++ +Y H DV P + + W +P+ + + ++ RG+ D K
Sbjct: 63 SQPELPSIMLYSHTDVVPTFR-EHWTHDPYSAFKDEDGNIFARGAQDMK 110
>Z68214-3|CAA92445.1| 399|Caenorhabditis elegans Hypothetical
protein C10C5.3 protein.
Length = 399
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 330 NDPKKNTVCIYGHLDVQPALKSDGWETEPFE-LVERNEKLYGRGSTDDK 473
+ P+ ++ +Y H DV P + + W +P+ + + ++ RG+ D K
Sbjct: 63 SQPELPSIMLYSHTDVVPTFR-EHWTHDPYSAFKDEDGNIFARGAQDMK 110
>Z66521-11|CAA91398.2| 471|Caenorhabditis elegans Hypothetical
protein W02B12.7 protein.
Length = 471
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 22 YHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSC 174
Y+ H + Q++ T+P++ + + K+ K L +E+ PS SC
Sbjct: 11 YNNHTNDLKHQIAQLERKTATIPKLENQLHKAKNQNKVLRRESALFPSASC 61
>AC024881-9|AAK71410.1| 588|Caenorhabditis elegans Hypothetical
protein Y97E10B.1 protein.
Length = 588
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 280 IV*KPTSLNL*WLRLPSICLASSEPYGCNPHDISHHMKRMEW 155
IV P SLN W+ P I E Y N + I+ H+K + W
Sbjct: 407 IVVDPRSLNYTWIHFPPILPNGLEKYEVNENVIT-HLKTIFW 447
>AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like
protein protein.
Length = 605
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 22 YHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSC 174
Y+ H + Q++ T+P++ + + K+ K L +E+ PS SC
Sbjct: 145 YNNHTNDLKHQIAQLERKTATIPKLENQLHKAKNQNKVLRRESALFPSASC 195
>AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 12 protein.
Length = 341
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 14 FLLIINIIQ*VPNKFLQKWQRKKH 85
FL+I+N+ + N+FL+ W KK+
Sbjct: 172 FLMILNLFALLTNQFLRTWNLKKY 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,037,521
Number of Sequences: 27780
Number of extensions: 387961
Number of successful extensions: 976
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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