Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1414
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    29   0.42 
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   3.9  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   5.1  
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    25   9.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.0  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   9.0  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 517 NCGAXLRGHEQRIQNLVWLKKGGGCPIMNIXSEYTKL 627
           NC    +  E R+ N VW ++  G  I+N+   + KL
Sbjct: 24  NCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKL 60


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +2

Query: 296 DTMKLIVNWSGK-EFLRETW---TRFVEDSFPIVNDQEVMDVY 412
           D ++ +  W  K + ++  W   T   E SFP++ND+E + V+
Sbjct: 230 DDLETLPKWPDKVKKMQRNWIGRTTGFEISFPLLNDKETLTVF 272


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 48  PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEK 191
           P+ M + S  P+     VY+    + L C   NAK  + LV+ + EE+
Sbjct: 387 PVQMVHRSALPSQDHWKVYELITRRFLACCSDNAKGAETLVQVKMEEE 434


>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 102 YDNKYYKNLGCLIK-NAKRKKHLVEHEQEEKQWDLLDNYMVAED 230
           Y+   Y  L  L K + K+ K + +H+   + W LLD     +D
Sbjct: 238 YEESNYTRLPKLSKKDLKKSKRVKKHDYGGEDWSLLDRKFHDDD 281


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 375  SPL*TTKR*WTCTSSPTSNPHAPTGATSSSLN 470
            SP+    R  +  + P SNP+ P    SS++N
Sbjct: 964  SPVAAASRISSSPNMPPSNPYTPIAVASSTVN 995


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 269 FKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSF 376
           F  + S+ P   +LIVN    + +   WT   +D +
Sbjct: 109 FSSVNSLSPSLFQLIVNRMRFDAIHPEWTNGSDDEY 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,219
Number of Sequences: 5004
Number of extensions: 52174
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)