Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1414
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1558 - 34417801-34417920,34418930-34419051,34419458-344195...    29   3.0  
02_04_0434 - 22904790-22904927,22905220-22905318,22905404-229054...    29   3.0  
05_01_0137 + 917533-917814,918080-918352                               29   4.0  
02_05_0600 - 30273080-30274692,30274709-30274949                       28   5.3  
12_01_0610 + 5030130-5030247,5030957-5033193                           28   7.0  
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458...    28   7.0  
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811...    27   9.2  

>04_04_1558 -
           34417801-34417920,34418930-34419051,34419458-34419531,
           34419736-34419819,34419945-34420080,34420806-34420836,
           34421228-34421386,34422375-34422595,34422685-34422898
          Length = 386

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 162 HLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNKNLPF 269
           HLV H      +D +   ++ +DP+ GPG+   L F
Sbjct: 124 HLVFHALHATPFDRVKAVIIGQDPYHGPGQAMGLSF 159


>02_04_0434 -
           22904790-22904927,22905220-22905318,22905404-22905472,
           22905582-22905683,22905750-22905824,22906293-22906417,
           22906511-22906589,22906933-22907074,22907200-22907441
          Length = 356

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 25/102 (24%), Positives = 46/102 (45%)
 Frame = +2

Query: 14  SAAADPFCNKKTYKYAELFIHPHHRAYLRVRQ*ILQKLGLSYQKRQAQEAPSRT*TRGEA 193
           +AAA PF NK+     ++ +    R   R R  +   + L    ++  +  S+  ++G A
Sbjct: 58  AAAAAPFRNKE-----KVLVTCSRRINYRYRHLMQNVVSLLPHAKKDSKVESKQ-SKGNA 111

Query: 194 MGSSRQLHGCRRSLFRTGQKQKLTLFKEIRSVKPDTMKLIVN 319
           +    +L  C   LF   +KQK      ++S    ++K +VN
Sbjct: 112 LNELLELRNCSSCLFFECRKQKDLYLWMVKSPGGPSVKFLVN 153


>05_01_0137 + 917533-917814,918080-918352
          Length = 184

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 587 PPPFFSQTKFCIRCSCPRXMAPQX*LLVGARSLLPT*ERVERGTCST 447
           PPP F +  FC RC+ P    P      G   +LP  E + R + S+
Sbjct: 71  PPPSFRRRSFCRRCTPPPPPPP---AAGGGGVVLPAAEAIGRSSSSS 114


>02_05_0600 - 30273080-30274692,30274709-30274949
          Length = 617

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 393 KR*WTCTSSPTSNPHAPTGATSSSLNTLLC 482
           +R W  TSSPT  P  P    S+    LLC
Sbjct: 470 RRCWASTSSPTGLPSPPPTGVSACTAGLLC 499


>12_01_0610 + 5030130-5030247,5030957-5033193
          Length = 784

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 463 RSTRSYVGRRLRAPTSNXNCGAXLRGHEQRIQNLVWLKKGGGCPIMNIXSEY 618
           ++ RS +G  +   T+N +    + G + R  NL W   GGG  I    S+Y
Sbjct: 590 KNGRSLIGS-MNMQTANKDLVCTVNG-DARFHNLPWNTTGGGISITKFGSKY 639


>01_03_0200 +
           13744735-13745037,13745071-13745610,13745704-13745862,
           13748992-13749123,13749282-13749472,13749541-13749792,
           13750248-13750323,13750411-13750602,13750688-13750689,
           13753230-13753287,13753736-13754941
          Length = 1036

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/73 (26%), Positives = 38/73 (52%)
 Frame = +2

Query: 236 FRTGQKQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYL 415
           ++ G KQ  + +K+  + K D ++   +  GK+F +E    +++ S P+   +E    Y 
Sbjct: 174 WKEGFKQDASSYKKCDAYK-DKLR---DEGGKQFEKELIDFYMKYSIPLQEPKEPEPEYP 229

Query: 416 VXNLKPTRPNRCY 454
             +L+ T+P R Y
Sbjct: 230 FDDLQETKPCRLY 242


>10_01_0007 -
           79867-79950,80258-80303,80409-80641,80765-80836,
           81135-81230,81506-81607,81684-82349
          Length = 432

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 433 GFEVGDEVHVHHLLVVYN 380
           GF  GD + VHH+LV  N
Sbjct: 159 GFRTGDTIAVHHILVFLN 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,846,652
Number of Sequences: 37544
Number of extensions: 363937
Number of successful extensions: 973
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)