Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1414
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)          33   0.14 
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  31   0.58 
SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)                   29   2.3  
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)                    29   4.1  
SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)                       28   7.1  
SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)                       28   7.1  
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)              27   9.4  
SB_56769| Best HMM Match : UIM (HMM E-Value=0.0025)                    27   9.4  
SB_6215| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)
          Length = 735

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +3

Query: 78  PTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAE 227
           PT  RT+  D+K   ++  L+K  K +   + +E E K+W  L NYM AE
Sbjct: 87  PTFARTFAVDSKVTPSVIALLKQFKWEIVAIIYE-EWKKWVQLKNYMKAE 135


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 25/90 (27%), Positives = 43/90 (47%)
 Frame = +2

Query: 170 RT*TRGEAMGSSRQLHGCRRSLFRTGQKQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRET 349
           R+ T     G S+Q+     ++F+ G+K      +E +++K     + V W   E  RET
Sbjct: 123 RSNTENRFDGISKQMELLGATIFKDGKKAT----RE-KALKKGIHLVTVLWV--ESCRET 175

Query: 350 WTRFVEDSFPIVNDQEVMDVYLVXNLKPTR 439
             R  E+ FP++   E+    L+  LK T+
Sbjct: 176 GKRVAEELFPVIAQDELSTPLLMGKLKRTK 205


>SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)
          Length = 416

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 249 CPVLKRDLRQPCSCLEDPIASPLVHVRLGASCAWRF**DSPSFCNIYC 106
           CP + R +  PC  ++ P++ P  +V    S    +   + S C  YC
Sbjct: 71  CPYVNRTVSVPCPYVKRPVSVPCPYVNRAVSVPCPYVNRAVSVCQPYC 118



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 267 RVSFCFCPVLKRDLRQPCSCLEDPIASPLVHVRLGAS 157
           R+S   CP + R +  PC  ++ P++ P  +V    S
Sbjct: 263 RMSTVLCPYVNRTVSVPCPYVKRPVSVPCPYVNRAVS 299


>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
          Length = 186

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +2

Query: 257 KLTLF-KEIRSVKPDTM--KLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVXNL 427
           KL +F K+     PD +  ++++  S ++  RE W   +    PI     + + +   +L
Sbjct: 96  KLQIFVKQKLEGVPDKIMGRVVLGTSAEDLEREHWNEAMTAKKPIARWHSLREFH--NSL 153

Query: 428 KPTRPNRCYKFLA 466
            PTRPNR  K +A
Sbjct: 154 LPTRPNRTSKPIA 166


>SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 105 DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 215
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


>SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 105 DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 215
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
          Length = 765

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 420 PTSNPHAPTGATSSSLNTLLCGKKTTCP 503
           P S  H+P  +T  S+NT+L  +   CP
Sbjct: 703 PVSRYHSPRPSTCLSINTILHDQARACP 730


>SB_56769| Best HMM Match : UIM (HMM E-Value=0.0025)
          Length = 358

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/66 (21%), Positives = 32/66 (48%)
 Frame = +2

Query: 236 FRTGQKQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYL 415
           F TG K+K T+F+ I++   + ++ +     + +LR   +  ++ +  + N +    + L
Sbjct: 51  FLTGNKEKKTIFELIQTEVEEAIESLSQMVARPYLRTPRSHIIQATSLLANKRRTFLLAL 110

Query: 416 VXNLKP 433
              L P
Sbjct: 111 TRGLIP 116


>SB_6215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 697

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 20  AADPFCNKKTYKYAELFI 73
           A DPFCNK  Y+  EL I
Sbjct: 64  AKDPFCNKVKYRVTELSI 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,842,437
Number of Sequences: 59808
Number of extensions: 393750
Number of successful extensions: 1345
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)