Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1414
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14890.1 68418.m01746 NHL repeat-containing protein contains ...    29   1.9  
At5g24820.1 68418.m02932 aspartyl protease family protein low si...    29   3.3  
At1g22275.1 68414.m02784 expressed protein                             29   3.3  
At1g22260.1 68414.m02782 expressed protein                             29   3.3  
At3g13770.1 68416.m01737 pentatricopeptide (PPR) repeat-containi...    28   4.4  

>At5g14890.1 68418.m01746 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 754

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = +3

Query: 162 HLVEHEQEEKQWDLLDNYMVAED---PFLGP--GKNKNLPFLK 275
           H   H+QE  QW + +++ + E+   P L P  G N + P+L+
Sbjct: 354 HQYHHQQEPNQWPVQESFAIPEEDGPPALEPRSGTNPDKPYLR 396


>At5g24820.1 68418.m02932 aspartyl protease family protein low
           similarity to CND41, chloroplast nucleoid DNA binding
           protein [Nicotiana tabacum] GI:2541876; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 407

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +3

Query: 405 TCTSSPTSNPHAPTGATSSSLNTLLCGKKTTCPHX*SXLWSHXTWA*TTNTEFSLA 572
           TC  +   +  + +  +S++ +T+ C   + CPH  S  +++   A TTNT  S++
Sbjct: 70  TCLDNDDDHQCSLSDKSSNTFSTISCNNSSLCPHV-STNYTNYFNATTTNTTTSVS 124


>At1g22275.1 68414.m02784 expressed protein
          Length = 856

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = +3

Query: 165 LVEHEQEEKQWDLLDNYMVAEDPFLGPGKNKNLPFLKKF 281
           LV  EQE K+ D L +Y++AE   L     KNL F +KF
Sbjct: 276 LVRSEQEVKKLDELVHYLIAE---LTELDKKNLTFKEKF 311


>At1g22260.1 68414.m02782 expressed protein
          Length = 857

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/39 (48%), Positives = 22/39 (56%)
 Frame = +3

Query: 165 LVEHEQEEKQWDLLDNYMVAEDPFLGPGKNKNLPFLKKF 281
           LV  EQE K+ D L  Y+VAE   L     KNL F +KF
Sbjct: 276 LVSSEQEVKKLDELVQYLVAE---LTELDKKNLTFKEKF 311


>At3g13770.1 68416.m01737 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 628

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +2

Query: 131 LSYQKRQAQEAPSRT*TRGEAMGSSRQLHGCRRSLFRTGQKQKLTLFKEIRSVKPDTMKL 310
           LSY +R     P RT     AM      HG  R +      +   L ++ + VKPD + L
Sbjct: 305 LSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVL-----ELFRLMRDEKRVKPDAVTL 359

Query: 311 IVNWSG 328
           +   SG
Sbjct: 360 LAVLSG 365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,781,473
Number of Sequences: 28952
Number of extensions: 281023
Number of successful extensions: 800
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)