Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1413
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    30   0.36 
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    28   1.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   2.5  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    26   4.4  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    26   4.4  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    25   7.7  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   7.7  

>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -2

Query: 659 PLRDMDQILSLDSTDDATTPSRIPMRKVTNTKTSIARAAANASK 528
           P  D+D++L +D +   ++PS++ +R    +   +AR A+ A K
Sbjct: 732 PRYDLDKVLVVDQSRMVSSPSKVSIRPKMKSVRLLAREASEARK 775


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +3

Query: 348 SPACRTPTRPTACAVDETPRSAVPTAPASCCPMGSFVFH*PASGNRSASEDGSRRRAN 521
           SP  +TP +  +  V  TP S+ PT  +   P  S         NRS  E   R + N
Sbjct: 602 SPLPKTPEKDRSLNV--TPSSSTPTPASVLAPPSSASLSSSKDANRSVPESPRREKKN 657


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 480 YLTPASGRQRTPSGSTTPVRS 418
           Y  P +  QRTPSGS TP+ S
Sbjct: 346 YNPPRAPLQRTPSGSLTPLSS 366



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -1

Query: 495 RTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRL--LRKPSDASES 361
           RTP+G LTP S R   P+ ++ P     QT  S +  + +PS  S+S
Sbjct: 355 RTPSGSLTPLSSR---PAHTSLPPIPTVQTTSSNVPPVNRPSLKSKS 398


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -1

Query: 477 LTPASGRQ--RTPSGSTTPVRS 418
           +T  SGRQ  RTP GSTTP  S
Sbjct: 138 MTTRSGRQSPRTPIGSTTPKSS 159


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 224 SVICHFSVACAMSCLFTFVYNRN 292
           SV+CHF+ +CA+ C     +  N
Sbjct: 90  SVMCHFAWSCALPCFVDSFFPSN 112


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 513 ADGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSD 373
           ++GS P + +   +PAS     PS   +          S LLR+P++
Sbjct: 292 SNGSSPTSESALNSPASSVSSLPSLGASQTTDSSSLNQSSLLRRPAN 338


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 393 DETPRSAVPTAPASCCPMGSF-VFH*PASGNRSASEDGSRR 512
           D+T  S + T   +CC M SF + H P   + + S + S R
Sbjct: 790 DKTMESCIDTLITNCCAMQSFSIMHLPKFFSITMSSNLSER 830


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,998
Number of Sequences: 5004
Number of extensions: 47365
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)