Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1413
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0549 + 18696903-18698330 33 0.16
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 31 0.64
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380... 31 0.85
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570... 31 1.1
12_02_1154 - 26540090-26540653 30 1.5
11_07_0003 - 27182551-27183054 30 1.5
09_02_0278 + 6691685-6692188 30 1.5
02_05_0584 - 30135768-30135790,30136104-30136866 30 1.5
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 29 2.6
05_01_0407 + 3208818-3210218 29 2.6
02_01_0493 + 3566451-3566954 29 3.4
01_07_0319 - 42705661-42705972,42706044-42706169 29 3.4
11_06_0682 - 26253319-26253575,26254009-26254114 29 4.5
05_05_0392 + 24629528-24630442 29 4.5
01_01_0139 + 1263356-1264273 28 6.0
12_01_1045 - 10739396-10739402,10739968-10740239,10740361-107409... 28 7.9
10_08_0928 + 21617977-21618157,21618260-21618378,21618653-216187... 28 7.9
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502... 28 7.9
>10_08_0549 + 18696903-18698330
Length = 475
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = -3
Query: 427 GAVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIP 287
GAV RG ++ A +V V R +AR PPRP A HRE +P
Sbjct: 180 GAVAEMARGGAAAAPSVAPVWGREMLEARSPPRPAFA--HREYDEVP 224
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = -1
Query: 498 PRTPTGYLTPASGRQRTPSGSTTPVRSGQQTA------VSRLLRKPSD 373
PR P+ + TP+S TPS ++ P SG+ A L+R P+D
Sbjct: 77 PRAPSRHATPSSSPPSTPSSASAPPPSGRHPAFPWGASTHLLIRSPAD 124
>07_01_0511 +
3806475-3806876,3807914-3808039,3808120-3808193,
3808278-3808347,3808431-3808486,3808578-3808649,
3808678-3808811,3808967-3809030,3809111-3809240,
3809326-3809541,3809629-3809750,3810527-3810701,
3810788-3810878,3811040-3811197,3811330-3811518,
3813257-3813340,3813362-3813536,3815300-3815955,
3816226-3816648,3816752-3816790
Length = 1151
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 403 GVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIV-NERKQTT 260
G + ++ A G G H D+ PP +++HR T + P +ER T
Sbjct: 800 GAAGSSTATGAAGSNHTADSTVPPSLLSSEHHRSTESDPSAEHERHDIT 848
>04_03_0925 -
20856628-20856690,20856786-20856845,20856924-20857001,
20857127-20857192,20857542-20858675,20858991-20860283
Length = 897
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -2
Query: 659 PLRDMDQILSLDSTDDATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPTAPVLGRRP 483
P R+ S A + +P RK + + ++ A AAA GV+ T VL R+P
Sbjct: 50 PARNASAAPPSGSPATAAAAAPVPSRKESGSTSAAAPAAATRKASGVAAATTGVLPRKP 108
>12_02_1154 - 26540090-26540653
Length = 187
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 430 RRAARWGPLSSTSRRQVTGRRPR-TGAVGVLTPSLLALAAARAIEV 564
RRA R G RR+V +P+ TGA+ + +P LA AAA+A +V
Sbjct: 107 RRAVRGG-----RRRRVRSTKPKETGAMDIASPRSLAAAAAKARKV 147
>11_07_0003 - 27182551-27183054
Length = 167
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 522 G*HADGSRPRTPTGYLTPASGRQRTPSGSTTPVRS 418
G + GS R+P G +P+SGR +GS VRS
Sbjct: 50 GSSSGGSSTRSPVGSASPSSGRNPATTGSPGGVRS 84
>09_02_0278 + 6691685-6692188
Length = 167
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 522 G*HADGSRPRTPTGYLTPASGRQRTPSGSTTPVRS 418
G + GS R+P G +P+SGR +GS VRS
Sbjct: 50 GSSSGGSSTRSPVGSASPSSGRNPATTGSPGGVRS 84
>02_05_0584 - 30135768-30135790,30136104-30136866
Length = 261
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 357 CRTPTRPTACAVDETPRSAVPTAPASCC 440
C TP D +AVPT PA+CC
Sbjct: 172 CMTPLMSVMPCADYLTNTAVPTPPATCC 199
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 29.5 bits (63), Expect = 2.6
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +1
Query: 400 HRGLLSRPHRRRAARWGPLSSTSRRQVTGRRPRTGAVGVL-TPSLLALAAARAIEVFVFV 576
H LLS PH A LS + R RRPR G V +PS ALAA R + V V
Sbjct: 4 HHLLLSPPHPHPAR----LSLVTSR----RRPRAGRVAAACSPSPSALAAGRRAVLLVGV 55
Query: 577 TFL--MGMRDGVVASS 618
+ L + +RD A++
Sbjct: 56 SVLPLLRLRDAAFAAA 71
>05_01_0407 + 3208818-3210218
Length = 466
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -3
Query: 424 AVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRH--AQNHRETRTIP 287
AVG RGV A V V R ARRPP PR A H E +P
Sbjct: 180 AVGEFARGVPG-APTVKPVWARELLSARRPPLPRDVAAPRHPEYEAVP 226
>02_01_0493 + 3566451-3566954
Length = 167
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 496 RTGAVGVL--TPSLLALAAARAIEVFVFVTFLMGMRDG 603
+ GAVG T S LA+AAA A+E+ FL G DG
Sbjct: 35 KEGAVGTTSSTASALAVAAAAAVELTNLFFFLHGTGDG 72
>01_07_0319 - 42705661-42705972,42706044-42706169
Length = 145
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 393 DETPRSAVPTAPASCCPMGSFVFH*P-ASGNRSASEDGSRRRANPKLACIGGSTRD 557
+ PR+AV A+ CP+ +FVF P G+ S R P+L + +TRD
Sbjct: 86 NRAPRAAVAALAATGCPVTAFVFANPRVGGHDFKSRFDGARGLGPRLLRV-HNTRD 140
>11_06_0682 - 26253319-26253575,26254009-26254114
Length = 120
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 360 RTPTRPTACAVDETPRSAVPTAPASCCPMGSFVF 461
RT + PT TP S+ PT A+ P GS V+
Sbjct: 48 RTQSMPTTPTTPVTPSSSSPTTTATTTPRGSNVW 81
>05_05_0392 + 24629528-24630442
Length = 304
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -3
Query: 430 AGAVGTA--DRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIP 287
+G +G A DRG ++ GR G A + PP PR R TR P
Sbjct: 144 SGELGRARRDRGPAAAVHGAGRPGGGRASPS-PPPPPRREPGERPTRRSP 192
>01_01_0139 + 1263356-1264273
Length = 305
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/53 (33%), Positives = 19/53 (35%)
Frame = +1
Query: 394 TRHRGLLSRPHRRRAARWGPLSSTSRRQVTGRRPRTGAVGVLTPSLLALAAAR 552
TR + S A W P S R RR GA TPS A AR
Sbjct: 89 TRAKASASASSTPALAPWRPSSRRPRSSAPTRRTAAGATSPTTPSTTTSARAR 141
>12_01_1045 -
10739396-10739402,10739968-10740239,10740361-10740941,
10741566-10742586
Length = 626
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 424 HRRRAARWGPLSSTSRRQVTGRRPRTGAVGVLTPSLLALAAARAIEVFVFV 576
H+ A++ + +++ Q +P A V+ P LLA A+ A EVF F+
Sbjct: 44 HKEDASKMMVVLASTTNQPAAEKP-AAARAVMNPLLLAAASFGACEVFYFL 93
>10_08_0928 +
21617977-21618157,21618260-21618378,21618653-21618774,
21618853-21619049,21619350-21619603,21619779-21619880,
21619976-21620404,21620611-21621369,21621586-21621771
Length = 782
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 513 ADGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLL 388
AD RPR+ YLT ++ + S +P SGQ S +L
Sbjct: 229 ADHDRPRSLHEYLTESTSASVGDNNSNSPCASGQTPRPSNVL 270
>01_01_0660 +
5029070-5029177,5029303-5029398,5029494-5029556,
5029836-5029913,5030446-5030614,5030797-5031180,
5031959-5032042,5032143-5032288,5032810-5033070,
5033147-5033328,5033421-5033586,5033650-5033703,
5034702-5034965,5035088-5035303,5035388-5035540,
5035630-5035827
Length = 873
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = -3
Query: 442 GQHDAGAVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIVNERKQ 266
G H+ + +G T +A G+V R A + P +++ E RT + + +K+
Sbjct: 110 GHHNVSDESKSHKGSDQTVRASGKVRKREATGQKEKEAPHAHRSYHERRTSGLSSFKKR 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,645,852
Number of Sequences: 37544
Number of extensions: 374282
Number of successful extensions: 1476
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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