Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1413
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25) 37 0.017
SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35) 30 2.0
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_51592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_58168| Best HMM Match : Podoplanin (HMM E-Value=1.1) 28 6.1
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2) 28 6.1
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 28 8.1
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 28 8.1
SB_4715| Best HMM Match : FlpD (HMM E-Value=1.1) 28 8.1
>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
Length = 1508
Score = 36.7 bits (81), Expect = 0.017
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = -1
Query: 606 NAVPHSHEESHEYEDFDRACCRQCKQAWG*HADGSRPRTPTGYLTPASGRQRTPSGSTTP 427
+A HS E S E E + R + G D SR R+P Y +PA+ R+P+ +P
Sbjct: 1100 DARTHSRERSSEREHHNGKSRRDLLEKKGSSRDSSRDRSPDHYQSPATS-DRSPNHYQSP 1158
Query: 426 VRSGQQ 409
+ G Q
Sbjct: 1159 TKPGNQ 1164
>SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35)
Length = 974
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = -3
Query: 436 HDAGAVGTADRGVSSTAQAVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIVNERKQTT- 260
H G T +R A + G RH+GD + R + ++PIV ER +T
Sbjct: 476 HFTGVPSTRERHPFLDAARIR--GRRHSGDPASAQVISETLSSRNSSSVPIVRERSHSTG 533
Query: 259 -HRTRD*EMTDDRSNLCNASR 200
+RT + + D + + + SR
Sbjct: 534 ANRTHERHSSFDEARMRDLSR 554
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = -1
Query: 513 ADGSRPRTPTGYLTPAS---GRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASESG 358
A SR TPT TP S R RTPS +TP + ++ R S S G
Sbjct: 195 APTSRTSTPTSRSTPRSRSRSRARTPSTPSTPSTPSTPSTITTSSRASSRGSARG 249
>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1776
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -2
Query: 647 MDQILSLDSTDDATTPSRIPMRKVTNTKTSIARAAANASKLGVSTPTAPV 498
M +++S +T D+T + P++ + TK I + + + VST +PV
Sbjct: 1211 MKELISTTTTSDSTQKAINPLQIINLTKLVIGTTQSTSDIIYVSTTNSPV 1260
>SB_51592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 608 TTPSRIPMRKVTNTKTSIARAAANASKLGVSTPTAPV 498
TTPSR P+R +T+ T I++ S+ + T P+
Sbjct: 73 TTPSRTPLRIITDPITKISQIITTPSRTPLRIITDPI 109
>SB_58168| Best HMM Match : Podoplanin (HMM E-Value=1.1)
Length = 506
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 635 LSLDSTDDATTPSRIPMRKVTNTKTSIARAAANAS 531
L+ + TDD T P+R P+ TK AR +++
Sbjct: 271 LATEGTDDVTPPARPPLAAAQQTKDRTARRPGDST 305
>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
Length = 1706
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 510 DGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQ 409
D SR R+P Y +PA+ R+P+ +P + G Q
Sbjct: 529 DSSRDRSPDHYQSPATS-DRSPNHYQSPTKPGNQ 561
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 351 PACRTPTRPTACAVDETPRSAVPTAPASCCPMGS 452
PA TPT+PT P + PT P + P G+
Sbjct: 98 PATTTPTKPTTTT---PPATTTPTKPTTTTPPGT 128
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 340 RPPRPRHAQNHRETRTIPIVNERKQTTHRTRD 245
RPPRPR + R+ R P ++ R + D
Sbjct: 1828 RPPRPRSGMDRRDERPRPDIDRRDERLRHEAD 1859
>SB_4715| Best HMM Match : FlpD (HMM E-Value=1.1)
Length = 705
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +3
Query: 378 TACAVDETPRSAVP-TAPASCCPMGSFVFH*PASGN-RSASEDGSRRRANPKLACIGGST 551
TA +V E P S VP ++P C P S SG+ R+ ++D + P+ GG
Sbjct: 562 TAPSVSEVPASTVPSSSPLRCSPGPSGTISASTSGSPRTLNQDSPPSPSQPE--SDGGDD 619
Query: 552 RDRSLRIRDFPHGNAGR 602
D R+ P A +
Sbjct: 620 EDVKSRVLYPPRYRANK 636
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,879,707
Number of Sequences: 59808
Number of extensions: 418129
Number of successful extensions: 1454
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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