Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1413
         (684 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL450998-13|CAH70861.1|  373|Homo sapiens SMART/HDAC1 associated...    33   0.95 
AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated...    33   0.95 
AL034555-5|CAI19527.1|  373|Homo sapiens SMART/HDAC1 associated ...    33   0.95 
AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated ...    33   0.95 
AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor transc...    33   0.95 
BC117331-1|AAI17332.1|  346|Homo sapiens selenoprotein V protein.      32   2.2  
BC036522-1|AAH36522.1|  780|Homo sapiens cation channel, sperm a...    32   2.2  
AY324825-1|AAP85542.1|  346|Homo sapiens selenoprotein V protein.      32   2.2  
AF407333-1|AAL14105.1|  780|Homo sapiens sperm ion channel protein.    32   2.2  
BC032950-1|AAH32950.1|  780|Homo sapiens cation channel, sperm a...    31   2.9  
AL450992-1|CAI12160.1|  249|Homo sapiens novel protein protein.        31   3.8  

>AL450998-13|CAH70861.1|  373|Homo sapiens SMART/HDAC1 associated
           repressor protein (SHARP) protein.
          Length = 373

 Score = 33.1 bits (72), Expect = 0.95
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 516 HADGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASES 361
           H+  SR ++P    + AS   R+PSGS +  RS    ++S      SD+S+S
Sbjct: 205 HSSQSRNQSPQRLASQASRPTRSPSGSGSRSRSSSSDSISSSSSTSSDSSDS 256


>AL450998-10|CAH70858.1| 3664|Homo sapiens SMART/HDAC1 associated
           repressor protein (SHARP) protein.
          Length = 3664

 Score = 33.1 bits (72), Expect = 0.95
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 516 HADGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASES 361
           H+  SR ++P    + AS   R+PSGS +  RS    ++S      SD+S+S
Sbjct: 246 HSSQSRNQSPQRLASQASRPTRSPSGSGSRSRSSSSDSISSSSSTSSDSSDS 297


>AL034555-5|CAI19527.1|  373|Homo sapiens SMART/HDAC1 associated
           repressor protein (SHARP) protein.
          Length = 373

 Score = 33.1 bits (72), Expect = 0.95
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 516 HADGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASES 361
           H+  SR ++P    + AS   R+PSGS +  RS    ++S      SD+S+S
Sbjct: 205 HSSQSRNQSPQRLASQASRPTRSPSGSGSRSRSSSSDSISSSSSTSSDSSDS 256


>AL034555-4|CAI19526.1| 3664|Homo sapiens SMART/HDAC1 associated
           repressor protein (SHARP) protein.
          Length = 3664

 Score = 33.1 bits (72), Expect = 0.95
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 516 HADGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASES 361
           H+  SR ++P    + AS   R+PSGS +  RS    ++S      SD+S+S
Sbjct: 246 HSSQSRNQSPQRLASQASRPTRSPSGSGSRSRSSSSDSISSSSSTSSDSSDS 297


>AF356524-1|AAK52750.1| 3664|Homo sapiens nuclear receptor
           transcription cofactor protein.
          Length = 3664

 Score = 33.1 bits (72), Expect = 0.95
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 516 HADGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASES 361
           H+  SR ++P    + AS   R+PSGS +  RS    ++S      SD+S+S
Sbjct: 246 HSSQSRNQSPQRLASQASRPTRSPSGSGSRSRSSSSDSISSSSSTSSDSSDS 297


>BC117331-1|AAI17332.1|  346|Homo sapiens selenoprotein V protein.
          Length = 346

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -1

Query: 495 RTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDA 370
           RTPT   TP   R RTP  + TPV +      S L+  P+ A
Sbjct: 26  RTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPLVLTPAPA 67


>BC036522-1|AAH36522.1|  780|Homo sapiens cation channel, sperm
           associated 1 protein.
          Length = 780

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
 Frame = -1

Query: 681 WMRAGSKPPS-RHGSNFILG*YRRCDNAVPHSHEESH---EYEDF-DRACCRQCKQAWG* 517
           + R+ S PP  R G +  L  Y    + VPH   ESH   E++DF D+A      Q+   
Sbjct: 22  FFRSHSSPPHHRPGHSRALHHYELHHHGVPHQRGESHHPPEFQDFHDQALSSHVHQSHH- 80

Query: 516 HADG---SRPRTPTGY-LTPASG 460
           H++     R   PTG+ L P+ G
Sbjct: 81  HSEARNHGRAHGPTGFGLAPSQG 103


>AY324825-1|AAP85542.1|  346|Homo sapiens selenoprotein V protein.
          Length = 346

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -1

Query: 495 RTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDA 370
           RTPT   TP   R RTP  + TPV +      S L+  P+ A
Sbjct: 26  RTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPLVLTPAPA 67


>AF407333-1|AAL14105.1|  780|Homo sapiens sperm ion channel protein.
          Length = 780

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
 Frame = -1

Query: 681 WMRAGSKPPS-RHGSNFILG*YRRCDNAVPHSHEESH---EYEDF-DRACCRQCKQAWG* 517
           + R+ S PP  R G +  L  Y    + VPH   ESH   E++DF D+A      Q+   
Sbjct: 22  FFRSHSSPPHHRPGHSRALHHYELHHHGVPHQRGESHHPPEFQDFHDQALSSHVHQSHH- 80

Query: 516 HADG---SRPRTPTGY-LTPASG 460
           H++     R   PTG+ L P+ G
Sbjct: 81  HSEARNHGRAHGPTGFGLAPSQG 103


>BC032950-1|AAH32950.1|  780|Homo sapiens cation channel, sperm
           associated 1 protein.
          Length = 780

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
 Frame = -1

Query: 681 WMRAGSKPPS-RHGSNFILG*YRRCDNAVPHSHEESH---EYEDF-DRACCRQCKQAWG* 517
           + R+ S PP  R G +  L  Y    + VPH   ESH   E++DF D+A      Q+   
Sbjct: 22  FFRSHSSPPHHRPGHSRALHHYELHHHGVPHQRGESHHPPEFQDFHDQALSSHVHQSHH- 80

Query: 516 HADGS---RPRTPTGY-LTPASG 460
           H++     R   PTG+ L P+ G
Sbjct: 81  HSEARNHVRAHGPTGFGLAPSQG 103


>AL450992-1|CAI12160.1|  249|Homo sapiens novel protein protein.
          Length = 249

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 345 ASPACRTPTRPTACAVDETPRSA-VPTAPASC 437
           ASPAC  P    AC +   P S  +P  PASC
Sbjct: 196 ASPACLLPPASPACLLPPLPASCLLPPLPASC 227


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,125,306
Number of Sequences: 237096
Number of extensions: 1799927
Number of successful extensions: 5437
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5400
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)