Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1413
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF098999-2|AAC68728.3|  369|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z74045-1|CAA98552.1|  535|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    27   9.4  
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF022981-4|AAG24205.1|  602|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 590 PMRKVTNTKTSIARAAANASKLGVSTPTAPVLGRRP 483
           P R+ T T+T+  R     + L  +T T PV+  RP
Sbjct: 286 PPRRTTTTRTTTKRLTTTKATLKTTTKTLPVIPPRP 321


>AF098999-2|AAC68728.3|  369|Caenorhabditis elegans Hypothetical
           protein W04C9.5 protein.
          Length = 369

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 613 MRQRRPAFP*GKSRIRRLRSRVLPPMQASLGLARRRLPSSDADR 482
           M  RR + P   +  ++  SR+ PP  AS    RR LP+S   R
Sbjct: 1   MSNRRVSLPVALAIPQQFSSRLSPPSPASPAATRRSLPTSPISR 44


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 501 RPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASES 361
           R R+P+G  + +  R+R+P+ +    +S Q+    R  R PS +S S
Sbjct: 466 RRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRRRRSPSSSSRS 512


>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
           protein Y51B11A.1 protein.
          Length = 1079

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 513 ADGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDAS 367
           +  + P   T    P + R   PS STTPV++   TA      +P  +S
Sbjct: 343 SSSTTPVQTTTTTAPETTRTEPPSSSTTPVQNTTTTAPETTSTEPPSSS 391


>Z74045-1|CAA98552.1|  535|Caenorhabditis elegans Hypothetical
           protein T27F2.1 protein.
          Length = 535

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 626 DSTDDATTPSRIPMRKVTNTKTSIARAAANASKL 525
           D+  DAT  +R+ + K+ N+K + A    +A KL
Sbjct: 143 DAVIDATEKTRMALEKIVNSKVASALPVRHADKL 176


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 489 PTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASESG 358
           P+G  T  SG    PSGS+T       ++ S L   P+ +++SG
Sbjct: 523 PSGSSTEPSGSSTEPSGSSTEPSGSSDSSSSEL---PNSSTDSG 563


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 489 PTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASESG 358
           P+G  T  SG    PSGS+T       ++ S L   P+ +++SG
Sbjct: 523 PSGSSTEPSGSSTEPSGSSTEPSGSSDSSSSEL---PNSSTDSG 563


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 489 PTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASESG 358
           P+G  T  SG    PSGS+T       ++ S L   P+ +++SG
Sbjct: 523 PSGSSTEPSGSSTEPSGSSTEPSGSSDSSSSEL---PNSSTDSG 563


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 489 PTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASESG 358
           P+G  T  SG    PSGS+T       ++ S L   P+ +++SG
Sbjct: 523 PSGSSTEPSGSSTEPSGSSTEPSGSSDSSSSEL---PNSSTDSG 563


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = -3

Query: 613 MRQRRP-AFP*GKSRIRRLRSRVLPPMQASLGLARRRLPSSDADRLPDAG*WKTKDPI 443
           +R+R P  +P G++R+  L S +L  +   +G+A  +L  S   R+ DA  +  KDPI
Sbjct: 187 IRKRDPYQYPRGRTRVEPL-SLIL--ISVIMGMASVQLIISSVRRIHDAAVYGIKDPI 241


>AF022981-4|AAG24205.1|  602|Caenorhabditis elegans Hypothetical
           protein W03F9.10 protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 516 HADGSRPRTPTGYLTPASGRQR-TPSGSTTPVRSGQQTAVSRLLRKPSDASESG 358
           HAD        G+ TPA      TPSG TT + +G +T  +  LRK  ++S  G
Sbjct: 424 HADDDDADVEGGFQTPAPVEGMITPSGMTTGI-TGIETPDTIELRKGKESSVLG 476


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,208,766
Number of Sequences: 27780
Number of extensions: 284513
Number of successful extensions: 990
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)