Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1413
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    27   0.17 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.7  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   2.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.7  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        23   2.7  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.7  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 597 GRRCRIVCTIQG*NLIHVSKG 659
           GR+ + VCT+ G  LI V KG
Sbjct: 78  GRKVKSVCTLDGNKLIQVQKG 98


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 513 ADGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVS 397
           A+ S+P + T  +TP+  RQR    +  P+ + +  A S
Sbjct: 85  AEASQPTSTTTSVTPSCRRQRYNIAAANPLLAEKLAAPS 123


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 285 IGMVRVSLWFWAW 323
           + ++ +SLWF AW
Sbjct: 279 VALMTISLWFMAW 291


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 340 RPPRPRHAQNHRETRTIPIVNERKQTTHRTRD*EMTDDRS 221
           R  R R++++ RE       NERK   +R R  E + DR+
Sbjct: 33  RTSRKRYSRS-REREQKSYKNERKYRKYRERSKERSRDRT 71


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 340 RPPRPRHAQNHRETRTIPIVNERKQTTHRTRD*EMTDDRS 221
           R  R R++++ RE       NERK   +R R  E + DR+
Sbjct: 33  RTSRKRYSRS-REREQKSYKNERKYRKYRERSKERSRDRT 71


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 285 IGMVRVSLWFWAW 323
           + ++ +SLWF AW
Sbjct: 29  VALMTISLWFMAW 41


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 448 GPLSSTSRRQVTG 486
           GPLSST   QVTG
Sbjct: 393 GPLSSTGLAQVTG 405


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 96  LLLCRCQPLCSRTKPINIKLISV 164
           ++LC    L   TKPI+++  SV
Sbjct: 503 IILCEAPALRDNTKPIDMEYSSV 525


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 141 LALCENRAAGIGIATSADYDIFVLKL 64
           +A+ E      G+A  A YD  VLKL
Sbjct: 311 IAIKEKLVKDSGVAKDAAYDNIVLKL 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,713
Number of Sequences: 438
Number of extensions: 3370
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)