Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1413
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55370.2 68416.m06150 Dof-type zinc finger domain-containing ...    30   1.6  
At3g55370.1 68416.m06149 Dof-type zinc finger domain-containing ...    30   1.6  
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie...    29   3.8  
At1g43995.1 68414.m05075 hypothetical protein similar to putativ...    29   3.8  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    28   5.0  
At2g47350.2 68415.m05910 PAPA-1-like family protein / zinc finge...    28   6.6  
At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finge...    28   6.6  
At3g54920.1 68416.m06086 pectate lyase, putative / powdery milde...    27   8.8  

>At3g55370.2 68416.m06150 Dof-type zinc finger domain-containing
           protein
          Length = 354

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = -1

Query: 555 RACCRQCKQAWG*HADGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPS 376
           R  C+ C++ W     GS    P G     + R ++ S ST  V +   T+ S L  +PS
Sbjct: 100 RHFCKTCRRYWT--RGGSLRNVPVGGGFRRNKRSKSRSKSTVVVSTDNTTSTSSLTSRPS 157

Query: 375 DASES 361
            ++ S
Sbjct: 158 YSNPS 162


>At3g55370.1 68416.m06149 Dof-type zinc finger domain-containing
           protein
          Length = 323

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = -1

Query: 555 RACCRQCKQAWG*HADGSRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPS 376
           R  C+ C++ W     GS    P G     + R ++ S ST  V +   T+ S L  +PS
Sbjct: 100 RHFCKTCRRYWT--RGGSLRNVPVGGGFRRNKRSKSRSKSTVVVSTDNTTSTSSLTSRPS 157

Query: 375 DASES 361
            ++ S
Sbjct: 158 YSNPS 162


>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
           PIR:S53363
          Length = 438

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 504 SRPRTPTGYLTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASES 361
           S  RT +  LTP+S  ++TPS ++TP R    T+ +   +   DA  S
Sbjct: 150 SPKRTVSRSLTPSS--RKTPSPTSTPSRISTTTSTTPSFKTAGDAQRS 195


>At1g43995.1 68414.m05075 hypothetical protein similar to putative
           non-LTR retroelement reverse transcriptase GI:4544460
           from [Arabidopsis thaliana]
          Length = 126

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 30/111 (27%), Positives = 39/111 (35%), Gaps = 3/111 (2%)
 Frame = +3

Query: 309 WFWAWXXXXXXXASPACRTPTRPTACAVDETPRSA--VPTAPASCCPMGSFV-FH*PASG 479
           W W W           CR  TR    A  E   +   +     S   +   V +  P+ G
Sbjct: 5   WAWKWRCDNEFDKRGKCRDRTRLIKEAAKEVTLATNKMNGTSGSVGSIDILVGWSVPSEG 64

Query: 480 NRSASEDGSRRRANPKLACIGGSTRDRSLRIRDFPHGNAGRRCRIVCTIQG 632
               + DG+ R  NP L+  GG  RDR          N GRR   V  + G
Sbjct: 65  WLKLNTDGASR-GNPTLSTAGGVLRDREGEWLGGFSLNIGRRTAPVAELWG 114


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 477 LTPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASES 361
           L+P+  R R+ S S +P+ +G+  +VSR   K    S+S
Sbjct: 780 LSPSRSRSRSKSYSKSPIGTGKARSVSRSPSKARSPSKS 818


>At2g47350.2 68415.m05910 PAPA-1-like family protein / zinc finger
           (HIT type) family protein contains Pfam domains,
           PF04795: PAPA-1-like conserved region and PF04438: HIT
           zinc finger
          Length = 374

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 474 TPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASE 364
           T +  +Q TPSG T    SG++ AVS    +  D +E
Sbjct: 252 TESGRKQLTPSGITNGENSGKKKAVSEQASEDMDCAE 288


>At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finger
           (HIT type) family protein contains Pfam domains,
           PF04795: PAPA-1-like conserved region and PF04438: HIT
           zinc finger
          Length = 486

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 474 TPASGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASE 364
           T +  +Q TPSG T    SG++ AVS    +  D +E
Sbjct: 252 TESGRKQLTPSGITNGENSGKKKAVSEQASEDMDCAE 288


>At3g54920.1 68416.m06086 pectate lyase, putative / powdery mildew
           susceptibility protein (PMR6) identical to powdery
           mildew susceptibility protein [Arabidopsis thaliana]
           GI:22506901; similar to pectate lyase 2 GP:6606534 from
           [Musa acuminata]
          Length = 501

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 66  ILIQIYHNRHLLLCRCQPLCSRTKPINIKL 155
           +L+Q + N   LLC    L S TKP+N+ L
Sbjct: 1   MLLQNFSNTIFLLCLFFTLLSATKPLNLTL 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,466,752
Number of Sequences: 28952
Number of extensions: 261897
Number of successful extensions: 804
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)