Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1411
         (561 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.       109   2e-26
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    25   0.44 
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   3.1  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   3.1  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   7.2  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   9.6  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score =  109 bits (262), Expect = 2e-26
 Identities = 52/72 (72%), Positives = 58/72 (80%)
 Frame = +1

Query: 256 GARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECP 435
           G RPC ISR L+VS+GCVSKIL RY ETGSI+P  IGGSKPRVAT  V  +I  YKRE P
Sbjct: 70  GIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPEVENRIEQYKRENP 129

Query: 436 SIFAWEIRDRLL 471
           SIF+WEIRDRL+
Sbjct: 130 SIFSWEIRDRLV 141



 Score = 47.2 bits (107), Expect = 1e-07
 Identities = 20/40 (50%), Positives = 28/40 (70%)
 Frame = +2

Query: 173 INQLGGVYVNGRPLPDSTRQKIVELAHSELDPATSAASCR 292
           +NQLGGV++NGRPLP+  R KIVE+A + + P   +   R
Sbjct: 42  VNQLGGVFINGRPLPNHIRLKIVEMAANGIRPCVISRQLR 81


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 372 EAPGGDHSSCPEDSRLQAGVPLDLRLGNQGPPAQ 473
           E+P  DH+SC  D  +       L +GN+ PP +
Sbjct: 10  ESPNIDHNSCSSDDTV-------LSVGNENPPPE 36


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 428 SAPRSSPGKSGTACSAENVCN 490
           S PRSSP ++ ++ S ++V +
Sbjct: 152 STPRSSPAETASSLSPQSVAS 172


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 428 SAPRSSPGKSGTACSAENVCN 490
           S PRSSP ++ ++ S ++V +
Sbjct: 143 STPRSSPAETASSLSPQSVAS 163


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 428 SAPRSSPGKSGTACSAENVCNNDNIPS 508
           S+P ++ G++G + S  N C+ ++  S
Sbjct: 164 SSPGAAAGRTGNSLSWNNPCSINSTSS 190


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 375 APGGDHSSCPED 410
           +PGGDHS   +D
Sbjct: 17  SPGGDHSENMQD 28


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,339
Number of Sequences: 336
Number of extensions: 2768
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)