Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1411
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    28   1.1  
SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual    27   1.4  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   3.3  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   4.4  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   7.6  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    25   7.6  

>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 346 IKPRAIGGSKPRVATTPVVQKIADYKRECPSI 441
           + PR  GG+ P V      +K+AD+    PSI
Sbjct: 416 MNPRRFGGTAPLVKLGAHFKKVADFSAHIPSI 447


>SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 399 CPEDSRLQAGVPLDLRLGN-QGPPAQLKTCAITTTYP 506
           C  DS  +   P+D    N   PP+ + TC ++  YP
Sbjct: 22  CINDSTFEITQPIDREESNCDNPPSLIFTCQLSEAYP 58


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 462 PPAQLKTCAITTTYPVVINKPSLRNLAS 545
           P + L+T ++  T P V N P L N+A+
Sbjct: 72  PVSGLRTDSLDVTAPAVANSPILNNIAA 99


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 426 PLVVGYLLDNWSGRHPGLRPTNRAWLYRPR 337
           PL++ +++DN   R P    ++R W  R R
Sbjct: 5   PLLLNFVVDNAQSRKPEALKSSRRWTDRAR 34


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 130 WWRPLRMLV-GWSQRHQSAGRGLRQRTTAAGLDSAKDRGTS 249
           WW PLR++V   +   Q A R  RQ  + A    A++  TS
Sbjct: 348 WWAPLRVVVLHATGSGQRASREKRQYESDASESEAEESKTS 388


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 441 DRGALPLVVGYLLDNWSGR-HPGLRPT 364
           DR    +V  YLL +W+GR    LRPT
Sbjct: 101 DRSIQKVVYLYLLASWTGRLDKSLRPT 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,606
Number of Sequences: 5004
Number of extensions: 45725
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)