Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1411
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0144 + 11796550-11797178,11797808-11797902,11798053-117981... 31 0.83
03_03_0282 - 16191487-16191975 30 1.1
10_08_0551 + 18702081-18702251,18702328-18702424,18702533-187026... 29 1.9
05_02_0120 - 6797954-6798970,6799466-6799951 29 2.5
04_04_0069 + 22506885-22508354 29 2.5
10_08_0233 - 16061182-16061714,16062765-16063578 28 4.4
05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462... 28 5.9
03_06_0431 + 33875572-33875803,33875985-33876373 28 5.9
02_05_0155 - 26340413-26340870,26341029-26341119 28 5.9
12_02_0951 + 24729116-24729247,24729307-24729708 27 7.7
09_06_0192 - 21450158-21450276,21451084-21451573,21451750-214518... 27 7.7
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237... 27 7.7
02_04_0053 - 19276891-19277079,19277947-19278073,19278320-192784... 27 7.7
02_01_0435 - 3164421-3165032 27 7.7
>04_03_0144 +
11796550-11797178,11797808-11797902,11798053-11798102,
11798382-11799293
Length = 561
Score = 30.7 bits (66), Expect = 0.83
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 112 AQRGYGWWRPLRMLVGWSQRHQSAGRGLRQRTTAAGLDSA 231
+Q YGW+RP+ M GW QR +GL R L A
Sbjct: 474 SQLFYGWFRPMLMDFGWLQR---CSKGLDMRMLEENLGQA 510
>03_03_0282 - 16191487-16191975
Length = 162
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 154 VGWSQRHQSAGRGLRQRTTAAGLDSAKDRGTSPLG 258
VGW+ R + R +R RTTAA D DRG + G
Sbjct: 90 VGWT-RTTAVARRMRARTTAATEDEDGDRGVADAG 123
>10_08_0551 +
18702081-18702251,18702328-18702424,18702533-18702651,
18702757-18702924,18703296-18703424,18703659-18703719,
18703813-18703916,18704173-18704279,18704319-18704493,
18704657-18704770,18704883-18704966,18705536-18705608,
18705689-18705775,18705863-18705917,18706007-18706078,
18706470-18706532,18706640-18706754,18706844-18706915
Length = 621
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 182 LGGVYVNGRPLPDSTRQKIVELAHSEL 262
LG V GRPL D T+QKIV + L
Sbjct: 294 LGAVRAQGRPLSDFTKQKIVVVGAGSL 320
>05_02_0120 - 6797954-6798970,6799466-6799951
Length = 500
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -2
Query: 401 TTGVVATRGFDPPIARGFIDPVS*YLPSILETQPLETCRMRLMSQG 264
TTG +R PP+ARG P+ LPS+L P+E R G
Sbjct: 33 TTGTKFSRPPPPPLARG--APLVGVLPSLLANGPVEFIRHHYEKMG 76
>04_04_0069 + 22506885-22508354
Length = 489
Score = 29.1 bits (62), Expect = 2.5
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 18 PRRSWADW*RRRGNPPRRLKPFGKCHTKMNSCTARLWVVEASSDARRLVTAASISWAGST 197
P R W RRR P+ ++++ +RLW E S+D RRL TA A +
Sbjct: 204 PARRWRGAQRRRRRCPQIRA------SRLDLEGSRLWWSETSADLRRLATAVGDDGAVAA 257
Query: 198 ST-DDRCRTRLGKRSW 242
+ D R +R+W
Sbjct: 258 AVGSDGVGRRRRRRTW 273
>10_08_0233 - 16061182-16061714,16062765-16063578
Length = 448
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 176 NQLGGVYVNGRPLPDSTRQKIVELAHSELDPATSAASCRSPTA 304
+ LG VNG PL S+ + HS PA+ A+ R PT+
Sbjct: 115 HHLGVPTVNGAPLCSSSSSALPP-PHSRTPPASPLAAARGPTS 156
>05_01_0536 -
4622767-4622865,4623550-4623673,4624571-4624685,
4624784-4625028,4625081-4625316
Length = 272
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +2
Query: 263 DPATSAASCRSPTAVSPKY*ADITRRGR*SHARLVGRSPGWRPLQLSRR*PTTSGSAPRS 442
DP S + + SPK D+ RRG AR+V GW P++ R+ + +A S
Sbjct: 62 DPDNRLGSTATESPPSPKLQPDMARRGG-RRARVV----GWPPVRAFRKNALAALAAASS 116
Query: 443 SPGK 454
S K
Sbjct: 117 SKAK 120
>03_06_0431 + 33875572-33875803,33875985-33876373
Length = 206
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 226 SRVRQRSSVDVDPAQLIDAAVTSRRASEEASTTHSRAVHEFIFV 95
SR + S+V P AAV +RRA+ +A+ SRA H ++
Sbjct: 29 SRAARSSAVASRPCAR-SAAVAARRAARQAAVAASRAAHAVCYL 71
>02_05_0155 - 26340413-26340870,26341029-26341119
Length = 182
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 121 GYGWWRPLRMLVGWSQRHQSAGRGLRQRT-TAAGLDSAK 234
G WRP + WS+ + RG RQR AAG DS +
Sbjct: 112 GRASWRPAGV---WSRGRRHGARGQRQRVLVAAGYDSGR 147
>12_02_0951 + 24729116-24729247,24729307-24729708
Length = 177
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 185 GGVYVNGRPLPDSTRQKIVELAHSELDPATSAASCRSPTAV 307
GGV G + T +I++LA ++ PA SAA+ R +A+
Sbjct: 31 GGVRRQGYGVEGPTSYEILDLAEAQPFPAASAAATRLDSAL 71
>09_06_0192 -
21450158-21450276,21451084-21451573,21451750-21451862,
21451992-21452376,21452461-21452529,21453165-21453264,
21454465-21454637,21454737-21454782,21454879-21454954,
21455160-21455196,21455799-21456041
Length = 616
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 202 RTTAAGLDSAKDRGTSPLGARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSKP 378
R AG+DS D GT+P G R + ++ + +G R GS +P G + P
Sbjct: 46 RRNPAGVDSG-DEGTAPGGRREKKLRLVMGLPDGSAKGEKTRKATDGSEEPSDSGPTTP 103
>03_05_0440 +
24322332-24322388,24323478-24323615,24323654-24323736,
24325038-24325128,24326091-24326189,24326356-24326418,
24327182-24327259,24329354-24329543,24329812-24330065,
24330159-24330531,24331193-24331276,24332085-24332371,
24332495-24332542,24333194-24333220,24333951-24333987,
24334063-24334250,24334343-24334521,24334595-24334877,
24335481-24335717,24335798-24335988,24336552-24336561,
24336844-24336984,24337073-24337288,24338437-24338727,
24338852-24339025
Length = 1272
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 295 SNGCVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQK 408
S GC+S + + +G KPRA+G PRV + Q+
Sbjct: 253 SYGCLSLLKKK--RSGGNKPRAVGKRTPRVPVASMYQR 288
>02_04_0053 -
19276891-19277079,19277947-19278073,19278320-19278435,
19279089-19279382
Length = 241
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -1
Query: 414 GYLLDNWSGRHPGLRPTNRAWLYRPRLVISA*YFGDTAVGDLQDAA 277
G L++ WSGR L R W+ I A TAVG +Q AA
Sbjct: 17 GSLVEEWSGRVKALEAGFRKWMAEQPTHIEA--AVTTAVGAVQGAA 60
>02_01_0435 - 3164421-3165032
Length = 203
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = +3
Query: 60 PPRRLKPFGKCHTKMNSCTARLW---VVEASSDARRLVTAASISWAGSTSTDDRCRTRLG 230
PP+ L P T +S T W V A++ A L + + + D+ CR+ G
Sbjct: 86 PPQHLPPAAAAATSSHSSTVESWGVTVAAAAASAGALGLPPPRNGGSNPAADEDCRSYCG 145
Query: 231 KRS 239
S
Sbjct: 146 SSS 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,179,429
Number of Sequences: 37544
Number of extensions: 396180
Number of successful extensions: 1549
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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