Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1411
(561 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.) 116 2e-26
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 9e-25
SB_28488| Best HMM Match : PAX (HMM E-Value=0) 97 1e-20
SB_5629| Best HMM Match : PAX (HMM E-Value=0) 89 2e-18
SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 2e-17
SB_18288| Best HMM Match : PAX (HMM E-Value=0.058) 42 3e-04
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36) 31 0.49
SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3) 30 1.5
SB_56198| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_20824| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54) 28 6.0
SB_36993| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_30665| Best HMM Match : F5_F8_type_C (HMM E-Value=2.5e-19) 27 7.9
SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25) 27 7.9
SB_49515| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_44118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 116 bits (278), Expect = 2e-26
Identities = 59/91 (64%), Positives = 68/91 (74%)
Frame = +1
Query: 256 GARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECP 435
G RPCDISR L+VS+GCVSKIL R+YETGSIKP IGGSKP+VAT VV KIA+YK P
Sbjct: 141 GVRPCDISRQLRVSHGCVSKILCRFYETGSIKPGVIGGSKPKVATGNVVTKIAEYKLANP 200
Query: 436 SIFAWEIRDRLLS*KRVQ*RQHTQLXSINRV 528
++FAWEIRDRLLS + SINR+
Sbjct: 201 TMFAWEIRDRLLSEGVCTSDNVPSVSSINRI 231
Score = 61.7 bits (143), Expect = 4e-10
Identities = 38/115 (33%), Positives = 51/115 (44%)
Frame = +2
Query: 164 HSGINQLGGVYVNGRPLPDSTRQKIVELAHSELDPATSAASCRSPTAVSPKY*ADITRRG 343
H G+NQLGGV+VNGRPLPD RQ+IVELA S + P + R K G
Sbjct: 110 HGGVNQLGGVFVNGRPLPDVVRQRIVELAQSGVRPCDISRQLRVSHGCVSKILCRFYETG 169
Query: 344 R*SHARLVGRSPGWRPLQLSRR*PTTSGSAPRSSPGKSGTACSAENVCNNDNIPS 508
+ G P + + + P + +E VC +DN+PS
Sbjct: 170 SIKPGVIGGSKPKVATGNVVTKIAEYKLANPTMFAWEIRDRLLSEGVCTSDNVPS 224
>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 110 bits (264), Expect = 9e-25
Identities = 55/91 (60%), Positives = 66/91 (72%)
Frame = +1
Query: 256 GARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECP 435
G RP +ISR L VS+GCVSKILGRYYETGS++P AIGGSKP+VAT VV KI +YK + P
Sbjct: 12 GVRPSEISRQLLVSHGCVSKILGRYYETGSVRPGAIGGSKPKVATPKVVSKILEYKDKNP 71
Query: 436 SIFAWEIRDRLLS*KRVQ*RQHTQLXSINRV 528
IFAWEIR+ LL+ + SINR+
Sbjct: 72 CIFAWEIRNNLLADGVCDKTNVPSVSSINRI 102
>SB_28488| Best HMM Match : PAX (HMM E-Value=0)
Length = 551
Score = 96.7 bits (230), Expect = 1e-20
Identities = 45/74 (60%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
Frame = +1
Query: 253 LGARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSK-PRVATTPVVQKIADYKRE 429
LG RPCDISR L+VS+GCVSKIL R+ +TGSI+P AI GS PR T + +KI +Y+RE
Sbjct: 39 LGVRPCDISRRLRVSHGCVSKILYRFQQTGSIEPGAIAGSSTPRNVTPEIEEKIDEYRRE 98
Query: 430 CPSIFAWEIRDRLL 471
P +F+WE+RDRL+
Sbjct: 99 NPGMFSWEVRDRLV 112
Score = 85.8 bits (203), Expect = 2e-17
Identities = 47/100 (47%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Frame = +1
Query: 253 LGARPCDISRILQVSNGCVSKILGRYYETGSIKP-RAIGGSKPRVATTPVVQKIADYKRE 429
LG RP DISR L+VS+GCVSKIL +++ETGS++P AI K R + V+ KI +Y E
Sbjct: 309 LGVRPSDISRRLRVSHGCVSKILNKFHETGSVEPGAAITTFKRRDISPAVLNKIEEYVFE 368
Query: 430 CPSIFAWEIRDRLLS*KRVQ*RQHTQLXSINRVYGTWPRR 549
P IF+WE+RDRLL K L +++ V T R+
Sbjct: 369 QPDIFSWEVRDRLLKDKLCSKCNVPSLEAVSNVIKTCARK 408
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = +2
Query: 173 INQLGGVYVNGRPLPDSTRQKIVELAHSELDP 268
+NQLGGV++NGRPLP R++I+ELA + P
Sbjct: 12 VNQLGGVFINGRPLPLVLRKQIIELAQLGVRP 43
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +2
Query: 173 INQLGGVYVNGRPLPDSTRQKIVELAHSELDPA 271
INQLGGV++NG+PLP R +I+ELA + P+
Sbjct: 282 INQLGGVFINGKPLPRPLRLRIIELARLGVRPS 314
>SB_5629| Best HMM Match : PAX (HMM E-Value=0)
Length = 383
Score = 89.0 bits (211), Expect = 2e-18
Identities = 39/91 (42%), Positives = 62/91 (68%)
Frame = +1
Query: 256 GARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECP 435
G RPC+ISR L++++GC+SK+L ++ +TGS++P + +PRV T+ + +KI Y+ E P
Sbjct: 85 GVRPCEISRRLKITHGCISKLLAKFQKTGSLEPGTVYKGRPRVVTSQIEKKIDQYRAEQP 144
Query: 436 SIFAWEIRDRLLS*KRVQ*RQHTQLXSINRV 528
IF+WEIRD+LL + L SI+R+
Sbjct: 145 GIFSWEIRDQLLQEGICDRSEVPSLSSISRI 175
Score = 45.6 bits (103), Expect = 3e-05
Identities = 31/127 (24%), Positives = 51/127 (40%)
Frame = +2
Query: 173 INQLGGVYVNGRPLPDSTRQKIVELAHSELDPATSAASCRSPTAVSPKY*ADITRRGR*S 352
+NQLGG YVNG+PLP R +I+ELA S + P + + K A + G
Sbjct: 57 VNQLGGGYVNGKPLPREIRIQIIELARSGVRPCEISRRLKITHGCISKLLAKFQKTGSLE 116
Query: 353 HARLVGRSPGWRPLQLSRR*PTTSGSAPRSSPGKSGTACSAENVCNNDNIPSCXQ*TEST 532
+ P Q+ ++ P + E +C+ +PS +
Sbjct: 117 PGTVYKGRPRVVTSQIEKKIDQYRAEQPGIFSWEIRDQLLQEGICDRSEVPSLSSISRIV 176
Query: 533 EPGLAEG 553
+ ++EG
Sbjct: 177 KRKVSEG 183
>SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 86.2 bits (204), Expect = 2e-17
Identities = 48/100 (48%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Frame = +1
Query: 253 LGARPCDISRILQVSNGCVSKILGRYYETGSIKP-RAIGGSKPRVATTPVVQKIADYKRE 429
LG RP DISR L+VS+GCVSKIL +++ETGS++P AI K R + V+ KI +Y E
Sbjct: 351 LGVRPSDISRRLRVSHGCVSKILNKFHETGSVEPGAAITTFKRRDISPAVLNKIEEYVFE 410
Query: 430 CPSIFAWEIRDRLLS*KRVQ*RQHTQLXSINRVYGTWPRR 549
P IF+WEIRDRLL K L +++ V T R+
Sbjct: 411 QPDIFSWEIRDRLLKDKLCSKCNVPSLEAVSNVIKTCARK 450
>SB_18288| Best HMM Match : PAX (HMM E-Value=0.058)
Length = 51
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/49 (46%), Positives = 29/49 (59%)
Frame = +1
Query: 382 VATTPVVQKIADYKRECPSIFAWEIRDRLLS*KRVQ*RQHTQLXSINRV 528
VAT VV KI +YK + P IFAWEIR+ LL+ + SINR+
Sbjct: 1 VATPKVVSKILEYKDKNPCIFAWEIRNNLLADGVCDKTNVPSVSSINRI 49
>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 31.9 bits (69), Expect = 0.37
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 238 DLLPSRVRQRSSVDVDPAQLIDAAVTSRRASEEASTTHSRAVHE 107
+L+PS+ R++ ++P L+ T EE+ST AVH+
Sbjct: 30 NLIPSKPRRKKKATINPFDLLKENGTESEDDEESSTKEPDAVHD 73
>SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)
Length = 885
Score = 31.5 bits (68), Expect = 0.49
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 189 GSTSTDDRCRTRLGK-RSWN*PTRS*TLRHQPHPAGLQRLCLQNTRQ-ILRDGVDKATRD 362
G+T+ + +T LGK + WN PT+ H ++ LC+ +T Q + G DK +
Sbjct: 144 GTTTKLEPLQTILGKVKLWNLPTKDCLRTITAHKGFVRGLCVDHTGQSFISVGDDKIVKQ 203
Query: 363 W 365
W
Sbjct: 204 W 204
>SB_733| Best HMM Match : DUF789 (HMM E-Value=1.3)
Length = 356
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 428 SAPR-SSPGKSGTACSAENVCNNDNIPSCXQ*TESTEPGLAEGAS 559
SAP SS G+SG+ C+A V + P C + + S A+G +
Sbjct: 90 SAPEESSSGRSGSGCAAVEVMSTQTCPLCLEDSISLATPQAQGCT 134
>SB_56198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 141 SSDARRLVTAASISWAGSTSTDDR 212
+SDA R++ + W GSTS DR
Sbjct: 108 TSDATRVILERGLVWGGSTSDSDR 131
>SB_20824| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +3
Query: 60 PPRRLKPF--GKCHTKMN-SCTARLWVVEASSDARRLVTAASISWAGSTSTDDRCRTRLG 230
P + +KP+ G+C S R+ V +S+ S S+AG+T+ ++ RT +G
Sbjct: 386 PRQPIKPYQCGQCELSFGTSRELRIHVDTHASEKPFKCGFCSRSFAGATTLNNHIRTHMG 445
Query: 231 KR 236
KR
Sbjct: 446 KR 447
>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
Length = 776
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 224 TRQKIVELAHSELDPATSAASCRSPT--AVSPKY*ADITRRGR*SHARLVGRSPGWRPLQ 397
TR++ + S +P T A+SC S A+ AD+T + + S + RSPG + L+
Sbjct: 715 TRRRHRPIEGSSSEPDTPASSCTSSCSKAIKALPLADVTNKAQTSRRQPSLRSPGCKRLR 774
Query: 398 L 400
+
Sbjct: 775 V 775
>SB_36993| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 333 RDGVDKATRDWWVEAPGGDHSSCPEDSRLQA 425
RDG D+ATRD EA H DS+ +A
Sbjct: 68 RDGQDEATRDGNDEATRDSHDEATRDSQDEA 98
>SB_30665| Best HMM Match : F5_F8_type_C (HMM E-Value=2.5e-19)
Length = 578
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 196 RQRTTAAGLDSAKD-RGTSPLGARPCDISRILQVSNGCVSKILG 324
R R + LD+ D RGT +R D ++ LQ++ G ++KI G
Sbjct: 403 RHRPQRSRLDTVADSRGTGAWSSRVNDKNQWLQIAFGGITKITG 446
>SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)
Length = 2146
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 353 GFIDPVS*YLPSILETQP 300
GF +P+ YLP+I E+QP
Sbjct: 896 GFAEPIEFYLPTISESQP 913
>SB_49515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 422 SGSAPRSSPGKSGTACSAENVCNNDNIPSCXQ*TESTEPGL 544
+G A +SP K TA NN PS Q T+S GL
Sbjct: 3 TGYAMLTSPNKDETAVHGCRTNNNSKYPSNPQETQSDRKGL 43
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,549,422
Number of Sequences: 59808
Number of extensions: 409200
Number of successful extensions: 1222
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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