Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1411
(561 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49937-3|CAA90186.2| 455|Caenorhabditis elegans Hypothetical pr... 133 9e-32
U31537-1|AAA82991.1| 455|Caenorhabditis elegans variable abnorm... 133 9e-32
Z70718-7|CAA94671.1| 289|Caenorhabditis elegans Hypothetical pr... 113 1e-25
U50072-5|AAA93452.2| 351|Caenorhabditis elegans Pax (paired box... 113 1e-25
AF002702-1|AAC27976.1| 289|Caenorhabditis elegans PAX protein p... 113 1e-25
U53336-9|AAA96181.1| 257|Caenorhabditis elegans Pax (paired box... 101 5e-22
Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical pr... 65 3e-11
Z48582-7|CAA88468.2| 308|Caenorhabditis elegans Hypothetical pr... 65 3e-11
U40955-1|AAA81747.3| 233|Caenorhabditis elegans Hypothetical pr... 54 5e-08
Z95623-1|CAB09133.1| 314|Caenorhabditis elegans Hypothetical pr... 54 7e-08
U23518-3|AAC70885.1| 109|Caenorhabditis elegans Hypothetical pr... 43 1e-04
Z54235-5|CAA90976.2| 202|Caenorhabditis elegans Hypothetical pr... 34 0.061
Z73105-3|CAA97441.2| 205|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z92833-2|CAB07379.1| 891|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z74033-10|CAA98478.1| 805|Caenorhabditis elegans Hypothetical p... 29 3.0
AL022272-5|CAA18355.1| 805|Caenorhabditis elegans Hypothetical ... 29 3.0
AC024201-10|ABQ13051.1| 281|Caenorhabditis elegans Hypothetical... 29 3.0
AC024201-11|ABQ13050.1| 284|Caenorhabditis elegans Hypothetical... 27 7.0
>Z49937-3|CAA90186.2| 455|Caenorhabditis elegans Hypothetical
protein F14F3.1a protein.
Length = 455
Score = 133 bits (321), Expect = 9e-32
Identities = 64/91 (70%), Positives = 74/91 (81%)
Frame = +1
Query: 256 GARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECP 435
G RPCDISR+LQVSNGCVSKIL RYYE+G+I+PRAIGGSKPRVAT+ VV+KI DYKR+ P
Sbjct: 37 GCRPCDISRLLQVSNGCVSKILCRYYESGTIRPRAIGGSKPRVATSDVVEKIEDYKRDQP 96
Query: 436 SIFAWEIRDRLLS*KRVQ*RQHTQLXSINRV 528
SIFAWEIRD+LL+ + SINRV
Sbjct: 97 SIFAWEIRDKLLADNICNNETIPSVSSINRV 127
Score = 67.3 bits (157), Expect = 7e-12
Identities = 38/115 (33%), Positives = 53/115 (46%)
Frame = +2
Query: 164 HSGINQLGGVYVNGRPLPDSTRQKIVELAHSELDPATSAASCRSPTAVSPKY*ADITRRG 343
H+G+NQLGGV+VNGRPLPD+TRQ+IV+LAH P + + K G
Sbjct: 6 HTGVNQLGGVFVNGRPLPDATRQRIVDLAHKGCRPCDISRLLQVSNGCVSKILCRYYESG 65
Query: 344 R*SHARLVGRSPGWRPLQLSRR*PTTSGSAPRSSPGKSGTACSAENVCNNDNIPS 508
+ G P + + P + A+N+CNN+ IPS
Sbjct: 66 TIRPRAIGGSKPRVATSDVVEKIEDYKRDQPSIFAWEIRDKLLADNICNNETIPS 120
>U31537-1|AAA82991.1| 455|Caenorhabditis elegans variable
abnormal-3 protein.
Length = 455
Score = 133 bits (321), Expect = 9e-32
Identities = 64/91 (70%), Positives = 74/91 (81%)
Frame = +1
Query: 256 GARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECP 435
G RPCDISR+LQVSNGCVSKIL RYYE+G+I+PRAIGGSKPRVAT+ VV+KI DYKR+ P
Sbjct: 37 GCRPCDISRLLQVSNGCVSKILCRYYESGTIRPRAIGGSKPRVATSDVVEKIEDYKRDQP 96
Query: 436 SIFAWEIRDRLLS*KRVQ*RQHTQLXSINRV 528
SIFAWEIRD+LL+ + SINRV
Sbjct: 97 SIFAWEIRDKLLADNICNNETIPSVSSINRV 127
Score = 67.3 bits (157), Expect = 7e-12
Identities = 38/115 (33%), Positives = 53/115 (46%)
Frame = +2
Query: 164 HSGINQLGGVYVNGRPLPDSTRQKIVELAHSELDPATSAASCRSPTAVSPKY*ADITRRG 343
H+G+NQLGGV+VNGRPLPD+TRQ+IV+LAH P + + K G
Sbjct: 6 HTGVNQLGGVFVNGRPLPDATRQRIVDLAHKGCRPCDISRLLQVSNGCVSKILCRYYESG 65
Query: 344 R*SHARLVGRSPGWRPLQLSRR*PTTSGSAPRSSPGKSGTACSAENVCNNDNIPS 508
+ G P + + P + A+N+CNN+ IPS
Sbjct: 66 TIRPRAIGGSKPRVATSDVVEKIEDYKRDQPSIFAWEIRDKLLADNICNNETIPS 120
>Z70718-7|CAA94671.1| 289|Caenorhabditis elegans Hypothetical
protein C04G2.7 protein.
Length = 289
Score = 113 bits (271), Expect = 1e-25
Identities = 54/91 (59%), Positives = 67/91 (73%)
Frame = +1
Query: 256 GARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECP 435
G RPCDISR L+VS+GCVSKILGRYY TGS++P IGGSKP+VAT VV+ IA YKR P
Sbjct: 61 GTRPCDISRQLKVSHGCVSKILGRYYSTGSVRPGVIGGSKPKVATPRVVECIAGYKRANP 120
Query: 436 SIFAWEIRDRLLS*KRVQ*RQHTQLXSINRV 528
++FAWEIR +L+ + + SINR+
Sbjct: 121 TMFAWEIRQKLIEDQICGEENVPSVSSINRI 151
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = +2
Query: 164 HSGINQLGGVYVNGRPLPDSTRQKIVELAHSELDP 268
H+G+NQLGGV+VNGRPL D+ R +IVE++ P
Sbjct: 30 HTGVNQLGGVFVNGRPLADTVRAQIVEMSQHGTRP 64
>U50072-5|AAA93452.2| 351|Caenorhabditis elegans Pax (paired box)
transcriptionfactor protein 2 protein.
Length = 351
Score = 113 bits (271), Expect = 1e-25
Identities = 54/91 (59%), Positives = 67/91 (73%)
Frame = +1
Query: 256 GARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECP 435
G RPCDISR L+VS+GCVSKILGRYY TGS++P IGGSKP+VAT VV+ IA YKR P
Sbjct: 123 GTRPCDISRQLKVSHGCVSKILGRYYSTGSVRPGVIGGSKPKVATPRVVECIAGYKRANP 182
Query: 436 SIFAWEIRDRLLS*KRVQ*RQHTQLXSINRV 528
++FAWEIR +L+ + + SINR+
Sbjct: 183 TMFAWEIRQKLIEDQICGEENVPSVSSINRI 213
Score = 52.0 bits (119), Expect = 3e-07
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = +2
Query: 164 HSGINQLGGVYVNGRPLPDSTRQKIVELAHSELDP 268
H+G+NQLGGV+VNGRPLPD+ R +IVE++ P
Sbjct: 92 HTGVNQLGGVFVNGRPLPDTIRAQIVEMSQHGTRP 126
>AF002702-1|AAC27976.1| 289|Caenorhabditis elegans PAX protein
protein.
Length = 289
Score = 113 bits (271), Expect = 1e-25
Identities = 54/91 (59%), Positives = 67/91 (73%)
Frame = +1
Query: 256 GARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECP 435
G RPCDISR L+VS+GCVSKILGRYY TGS++P IGGSKP+VAT VV+ IA YKR P
Sbjct: 61 GTRPCDISRQLKVSHGCVSKILGRYYSTGSVRPGVIGGSKPKVATPRVVECIAGYKRANP 120
Query: 436 SIFAWEIRDRLLS*KRVQ*RQHTQLXSINRV 528
++FAWEIR +L+ + + SINR+
Sbjct: 121 TMFAWEIRQKLIEDQICGEENVPSVSSINRI 151
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = +2
Query: 164 HSGINQLGGVYVNGRPLPDSTRQKIVELAHSELDP 268
H+G+NQLGGV+VNGRPL D+ R +IVE++ P
Sbjct: 30 HTGVNQLGGVFVNGRPLADTVRAQIVEMSQHGTRP 64
>U53336-9|AAA96181.1| 257|Caenorhabditis elegans Pax (paired box)
transcriptionfactor protein 1 protein.
Length = 257
Score = 101 bits (241), Expect = 5e-22
Identities = 47/73 (64%), Positives = 55/73 (75%)
Frame = +1
Query: 256 GARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECP 435
G RPCDISR L++S+GCVSKIL R+ E G+I P IGGS+PRV T VV+ I KR P
Sbjct: 93 GTRPCDISRQLKISHGCVSKILTRFSENGTIMPGTIGGSRPRVTTPKVVEYIRSLKRSDP 152
Query: 436 SIFAWEIRDRLLS 474
IFAWEIRDRL+S
Sbjct: 153 GIFAWEIRDRLIS 165
Score = 45.2 bits (102), Expect = 3e-05
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Frame = +2
Query: 173 INQLGGVYVNGRPLPDSTRQKIVELAHSELDPATSAASCRSPTAVSPKY*ADITRRGR*S 352
+NQLGGV+VNGRPLP R KIVEL+ P + + K + G
Sbjct: 65 VNQLGGVFVNGRPLPFEMRCKIVELSRQGTRPCDISRQLKISHGCVSKILTRFSENG--- 121
Query: 353 HARLVGRSPGWRPLQLSRR*PTTSGSAPRSSPG----KSGTACSAENVCNNDNIPS 508
+ G G RP + + S RS PG + + ++C+ N+PS
Sbjct: 122 -TIMPGTIGGSRPRVTTPKVVEYIRSLKRSDPGIFAWEIRDRLISADICDRANLPS 176
>Z48783-8|CAA88702.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 65.3 bits (152), Expect = 3e-11
Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = +1
Query: 256 GARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGS-KPRVATTPVVQKIADYKREC 432
G +PC ISR L+VS+G VSKIL RY ETGSI P IGGS + R+ V ++I E
Sbjct: 45 GIKPCHISRQLKVSHGAVSKILNRYAETGSISPGQIGGSPRARLTVQAVEKEILIACDEN 104
Query: 433 PSIFAWEIRDRLL 471
P + A E+RD L+
Sbjct: 105 PQMSAAELRDWLI 117
Score = 41.5 bits (93), Expect = 4e-04
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 173 INQLGGVYVNGRPLPDSTRQKIVELAHSELDP 268
+NQLGGV++NGRPLP R I+ +A + P
Sbjct: 17 VNQLGGVFINGRPLPIHVRHAIISMAKKGIKP 48
>Z48582-7|CAA88468.2| 308|Caenorhabditis elegans Hypothetical
protein F27E5.2 protein.
Length = 308
Score = 65.3 bits (152), Expect = 3e-11
Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = +1
Query: 256 GARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGS-KPRVATTPVVQKIADYKREC 432
G +PC ISR L+VS+G VSKIL RY ETGSI P IGGS + R+ V ++I E
Sbjct: 45 GIKPCHISRQLKVSHGAVSKILNRYAETGSISPGQIGGSPRARLTVQAVEKEILIACDEN 104
Query: 433 PSIFAWEIRDRLL 471
P + A E+RD L+
Sbjct: 105 PQMSAAELRDWLI 117
Score = 41.5 bits (93), Expect = 4e-04
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 173 INQLGGVYVNGRPLPDSTRQKIVELAHSELDP 268
+NQLGGV++NGRPLP R I+ +A + P
Sbjct: 17 VNQLGGVFINGRPLPIHVRHAIISMAKKGIKP 48
>U40955-1|AAA81747.3| 233|Caenorhabditis elegans Hypothetical
protein F48B9.5 protein.
Length = 233
Score = 54.4 bits (125), Expect = 5e-08
Identities = 29/72 (40%), Positives = 44/72 (61%)
Frame = +1
Query: 256 GARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECP 435
G + CDIS+ L V++ CVSKIL RY +TGS+KP+ +K +P+V + DY+
Sbjct: 129 GWKICDISKRLCVTHSCVSKILNRYRQTGSVKPK---DAKEGRTESPLVLAVRDYRSRLG 185
Query: 436 SIFAWEIRDRLL 471
EIR++L+
Sbjct: 186 MCRQSEIREQLI 197
>Z95623-1|CAB09133.1| 314|Caenorhabditis elegans Hypothetical
protein Y53C12C.1 protein.
Length = 314
Score = 54.0 bits (124), Expect = 7e-08
Identities = 23/36 (63%), Positives = 30/36 (83%)
Frame = +1
Query: 367 GSKPRVATTPVVQKIADYKRECPSIFAWEIRDRLLS 474
G+KP+VAT VV KI YKR+ P+IFAWEIR++L+S
Sbjct: 48 GTKPKVATPQVVAKIEQYKRDNPTIFAWEIREKLIS 83
>U23518-3|AAC70885.1| 109|Caenorhabditis elegans Hypothetical
protein F21D12.5 protein.
Length = 109
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 256 GARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSKPRV---ATTPVVQKIADYKR 426
G R I+R++ V++ CVSKI+ RY TGS++PR+ ++ + AT Q K+
Sbjct: 39 GCRVSHIARLIGVTHSCVSKIMSRYRRTGSVQPRSFRATENQENDNATWQQQQLKQQQKK 98
Query: 427 ECPSIFAWE 453
E P F+ E
Sbjct: 99 EKPLPFSIE 107
>Z54235-5|CAA90976.2| 202|Caenorhabditis elegans Hypothetical
protein C09G9.7 protein.
Length = 202
Score = 34.3 bits (75), Expect = 0.061
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 256 GARPCDISRILQVSNGCVSKILGRYYETGSIKPRA 360
G + I++ L +++ CVSK+L RY ETG I +A
Sbjct: 107 GMKKIHIAKQLGITHSCVSKVLRRYAETGEIVAKA 141
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 176 NQLGGVYVNGRPLPDSTRQKIVE 244
N+ G Y++GRPL RQKIVE
Sbjct: 80 NRYGRPYISGRPLLTCDRQKIVE 102
>Z73105-3|CAA97441.2| 205|Caenorhabditis elegans Hypothetical
protein R13.2 protein.
Length = 205
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 274 ISRILQVSNGCVSKILGRYYETGSIKP 354
IS+ L +S+GCVSKI+ R+ TG + P
Sbjct: 116 ISKSLCISHGCVSKIISRFRATGVLLP 142
>Z92833-2|CAB07379.1| 891|Caenorhabditis elegans Hypothetical
protein F38A6.2 protein.
Length = 891
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 273 HQPHPAGLQRLCLQNTRQILRDGVDKATRDW 365
H HP G+ L L + +IL G D+ +W
Sbjct: 539 HSVHPGGVYSLTLAKSGKILSGGKDRMVSEW 569
>Z74033-10|CAA98478.1| 805|Caenorhabditis elegans Hypothetical
protein H12C20.2a protein.
Length = 805
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 390 HSSCPEDSRLQAGVPLDLRLGNQGPPAQLKTCAITTTYPVVINKPSLRNLASQK 551
+S+ PEDS L L R N+ PPA+ K+C + + PS N +Q+
Sbjct: 411 NSTYPEDSLLNTSDLLKQRKENRSPPAK-KSCPMIRRTEPFHSVPSTSNSRTQR 463
>AL022272-5|CAA18355.1| 805|Caenorhabditis elegans Hypothetical
protein H12C20.2a protein.
Length = 805
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 390 HSSCPEDSRLQAGVPLDLRLGNQGPPAQLKTCAITTTYPVVINKPSLRNLASQK 551
+S+ PEDS L L R N+ PPA+ K+C + + PS N +Q+
Sbjct: 411 NSTYPEDSLLNTSDLLKQRKENRSPPAK-KSCPMIRRTEPFHSVPSTSNSRTQR 463
>AC024201-10|ABQ13051.1| 281|Caenorhabditis elegans Hypothetical
protein Y71F9B.9b protein.
Length = 281
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 188 GVYVNGRPLPDSTRQKIVELAHSELDPATSAASCRSPTA 304
G+ + P+PD T +K++ EL+P S + R A
Sbjct: 225 GITADMGPIPDFTDEKVINKLEEELEPKMSTLNIRKHQA 263
>AC024201-11|ABQ13050.1| 284|Caenorhabditis elegans Hypothetical
protein Y71F9B.9a protein.
Length = 284
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 209 PLPDSTRQKIVELAHSELDPATSAASCRSPTA 304
P+PD T +K++ EL+P S + R A
Sbjct: 235 PIPDFTDEKVINKLEEELEPKMSTLNIRKHQA 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,099,204
Number of Sequences: 27780
Number of extensions: 283377
Number of successful extensions: 907
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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