Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1411
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15510.1 68416.m01966 no apical meristem (NAM) family protein...    29   2.8  
At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (AB...    28   3.7  
At4g32290.1 68417.m04594 expressed protein contains Pfam profile...    28   4.9  
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea...    28   4.9  
At3g57710.1 68416.m06429 protein kinase family protein contains ...    27   6.5  
At3g01080.1 68416.m00011 WRKY family transcription factor simila...    27   6.5  
At1g07620.1 68414.m00817 GTP1/OBG family protein similar to SP|P...    27   6.5  
At5g58970.2 68418.m07388 uncoupling protein (UCP2) identical to ...    27   8.6  
At5g58970.1 68418.m07387 uncoupling protein (UCP2) identical to ...    27   8.6  
At5g57970.1 68418.m07253 methyladenine glycosylase family protei...    27   8.6  

>At3g15510.1 68416.m01966 no apical meristem (NAM) family protein
           (NAC2) identical to AtNAC2 [Arabidopsis thaliana]
           GI:12060426; contains Pfam PF02365: No apical meristem
           (NAM) domain; similar to jasmonic acid 2 GB:AAF04915
           from [Lycopersicon esculentum]
          Length = 364

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +3

Query: 351 ATRDWWVEAPGGDHSSCPEDSRLQAGVPLDLRLGNQGPPAQLKTCAITTTYPVVINKPSL 530
           AT  +W +A G D      D   + GV   L   +  PP  +K+  I   Y ++ NKP+ 
Sbjct: 93  ATSGYW-KATGTDKPVLASDGNQKVGVKKALVFYSGKPPKGVKSDWIMHEYRLIENKPNN 151

Query: 531 R 533
           R
Sbjct: 152 R 152


>At3g24650.1 68416.m03095 abscisic acid-insensitive protein 3 (ABI3)
           identical to abscisic acid-insensitive protein 3
           GI:16146 SP:Q01593 from [Arabidopsis thaliana], (Plant
           Cell 4 (10), 1251-1261 (1992))
          Length = 720

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 327 ILRDGVDKATRDWWVEAPGGDHS 395
           +L DG+D+  R+ W++  GGD++
Sbjct: 28  VLMDGIDEVGREIWLDDHGGDNN 50


>At4g32290.1 68417.m04594 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 384

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 383 TRGFDPPIARGFIDPVS*YLPSILETQPLETCRMRLMSQGL 261
           TR +DPP +  F++ V    PS+  T  L     RL++  L
Sbjct: 131 TREYDPPFSGVFLNRVIHSKPSLRHTPTLTAAARRLLAHAL 171


>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to serine/threonine kinase receptor associated
           protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
           UNR-interacting protein GB:NP_009109 [Homo sapiens]
          Length = 341

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 325 RYYETGSIKPRAIGGSKPRVATTPVVQKIADY 420
           R ++TG + P  I  SKP+ +   V +KI  +
Sbjct: 295 RIWQTGPVNPEEISESKPKQSVDEVARKIEGF 326


>At3g57710.1 68416.m06429 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 351

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +2

Query: 164 HSGINQLGGVYVNGRP--LPDSTRQKI 238
           H  +NQ GGV VNG    LP S R KI
Sbjct: 142 HGAMNQRGGVIVNGEESLLPWSVRLKI 168


>At3g01080.1 68416.m00011 WRKY family transcription factor similar
           to NtWRKY1 transcription factor GB:BAA82107 from
           [Nicotiana tabacum]
          Length = 423

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 51  RGNPPRRLKPFGKCHTKMNSCTARLWVVEASSDARRLVT 167
           +GNP  R   + KC T   +CT R  V  AS+DA+ ++T
Sbjct: 320 KGNPHPR--SYYKCTTP--NCTVRKHVERASTDAKAVIT 354


>At1g07620.1 68414.m00817 GTP1/OBG family protein similar to
           SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
           subtilis}; contains Pfam profile PF01018: GTP1/OBG
           family
          Length = 1016

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 232 LPSRVRQRSSVDVDPAQLIDAAVTSRRASEEASTTHSRAVHE 107
           +PS+V   S  D+DP  L   ++    ASEE S  H   + E
Sbjct: 671 IPSQVENESPKDLDPWDL-PGSLVEDPASEENSDVHQETMSE 711


>At5g58970.2 68418.m07388 uncoupling protein (UCP2) identical to
           uncoupling protein GI:4063007 from [Arabidopsis
           thaliana]
          Length = 272

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 320 SILETQPLETCRMRLMSQGLAPSGLVPRSFA 228
           +I+   P +  ++RL S+G  P+G VPR +A
Sbjct: 130 AIIVANPTDLVKVRLQSEGKLPAG-VPRRYA 159


>At5g58970.1 68418.m07387 uncoupling protein (UCP2) identical to
           uncoupling protein GI:4063007 from [Arabidopsis
           thaliana]
          Length = 305

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 320 SILETQPLETCRMRLMSQGLAPSGLVPRSFA 228
           +I+   P +  ++RL S+G  P+G VPR +A
Sbjct: 130 AIIVANPTDLVKVRLQSEGKLPAG-VPRRYA 159


>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 347

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 418 SRLSSGQLEWSPPGASTHQSRVALSTPSRNICLVFWRHSRW 296
           S +S G L+ SPP  S  + R    TP+ + C + +    W
Sbjct: 136 SVVSEGALD-SPPNGSETKKRCTWVTPNSDPCYIVFHDEEW 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,641,866
Number of Sequences: 28952
Number of extensions: 270666
Number of successful extensions: 798
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)