Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1410
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             129   3e-32
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.47 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   2.5  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  129 bits (311), Expect = 3e-32
 Identities = 70/103 (67%), Positives = 74/103 (71%)
 Frame = -3

Query: 643 CPEALFQTPRFWVWKACGNPRDHI*LHHEVRRGHP*GLVRQHRIVGGTTMYPGIADRMQK 464
           CPEALFQ P F   +ACG          +        L     + GGTTMYPGIADRMQK
Sbjct: 32  CPEALFQ-PSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK 90

Query: 463 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 335
           EITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 91  EITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133



 Score = 60.9 bits (141), Expect = 1e-11
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = -1

Query: 588 IHETTYNSIMKCDVDIRKDLYANTVLS 508
           IHETTYNSIMKCDVDIRKDLYANTVLS
Sbjct: 49  IHETTYNSIMKCDVDIRKDLYANTVLS 75


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 623 NPSFLGMESLRQSTRPHITPS*SATWTSVRTCTPTPYCRWYHHV 492
           +PSFL   S  Q    ++TPS     +     TP    + YHH+
Sbjct: 124 SPSFLSDHSRDQEQNLYLTPSPQMYSSGGEEITPRQSHQSYHHM 167


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -2

Query: 596 LRQSTRPHITPS*SATWTSVRTCTPTPYCRWY 501
           L  S   H+    S +   V    PTP  RWY
Sbjct: 241 LENSGVVHVAQDESTSLVCVAQACPTPEYRWY 272


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -2

Query: 596 LRQSTRPHITPS*SATWTSVRTCTPTPYCRWY 501
           L  S   H+    S +   V    PTP  RWY
Sbjct: 241 LENSGVVHVAQDESTSLVCVAQACPTPEYRWY 272


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 450 RAVISFCIRSAIPGYMVVPPTIRCWRTS 533
           R V+ F   S +  Y VVP  ++ W TS
Sbjct: 385 RKVLGFGYESNVK-YQVVPSALQMWSTS 411


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 450 RAVISFCIRSAIPGYMVVPPTIRCWRTS 533
           R V+ F   S +  Y VVP  ++ W TS
Sbjct: 385 RKVLGFGYESNVK-YQVVPSALQMWSTS 411


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 450 RAVISFCIRSAIPGYMVVPPTIRCWRTS 533
           R V+ F   S +  Y VVP  ++ W TS
Sbjct: 11  RKVLGFGYESNVK-YQVVPSALQMWSTS 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,380
Number of Sequences: 438
Number of extensions: 4593
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)