Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1409
         (569 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.60 
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   3.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 451 RNNFSIRYWSWNYRGCW 501
           R+NF   +  WNY  CW
Sbjct: 746 RHNFKGLHLDWNYPVCW 762



 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/21 (33%), Positives = 8/21 (38%)
 Frame = +1

Query: 439  ELFNRNNFSIRYWSWNYRGCW 501
            +    NNF      W Y  CW
Sbjct: 1930 DFIETNNFDGLDLDWEYPKCW 1950



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 442  LFNRNNFSIRYW 477
            +F   NFSI YW
Sbjct: 1615 VFYNANFSINYW 1626


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 6/19 (31%), Positives = 9/19 (47%)
 Frame = +1

Query: 460 FSIRYWSWNYRGCWHXIAL 516
           +++ YW   Y   WH   L
Sbjct: 117 YAVYYWRQQYEDFWHRYTL 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,056
Number of Sequences: 336
Number of extensions: 2198
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)