Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1409
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    28   0.84 
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    28   1.1  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   5.9  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   5.9  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.8  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 9/60 (15%)
 Frame = -3

Query: 186 YFVGFQN-SEVMINRDNWGHSYCXVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 34
           Y VG+ N + ++++   WGHS+  V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 436  YELFNRNNFSI--RYWSWNYRGCWHXIALQLFLVKIF 540
            Y+L  R+ F    R+WSW   G +H + L L  + +F
Sbjct: 1035 YQLGQRSEFFNLKRFWSWITNGFYHSLLLFLCSIAVF 1071


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 287 WAXNFTLNKLEAQSGLKMLLEYFVHGIIEYDLGSILLVF 171
           W    T+N L  Q  LK L +Y  +G++  D+ SIL V+
Sbjct: 488 WLFCVTVNSL-TQLVLKSL-KYDTYGVVARDISSILAVY 524


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 141 NWGHSYCXVRGEILGSSQDEHQRKHLPKVFSSIKNE 34
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 418 AAHKCNYELFNRNNFSIRYWSWNYR 492
           AA KC +E      FSI + S+N++
Sbjct: 73  AASKCEFEKIWSTTFSISFLSFNFK 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,917
Number of Sequences: 5004
Number of extensions: 37259
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)