Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1409
(569 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.094
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) 29 3.5
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -2
Query: 103 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDT 5
SWI RRT+AKAFAK VFINQERKLE RRR DT
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDT 36
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -2
Query: 88 RRTSAKAFAKGVFINQERKLEVRRRLDT 5
RRT+AKAFAK VFINQERKLE RRR DT
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDT 36
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -2
Query: 88 RRTSAKAFAKGVFINQERKLEVRRRLDT 5
RRT+AKAFAK VFINQERKLE RRR DT
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDT 36
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -2
Query: 88 RRTSAKAFAKGVFINQERKLEVRRRLDT 5
RRT+AKAFAK VFINQERKLE RRR DT
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDT 36
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -2
Query: 88 RRTSAKAFAKGVFINQERKLEVRRRLDT 5
RRT+AKAFAK VFINQERKLE RRR DT
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDT 38
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -2
Query: 85 RTSAKAFAKGVFINQERKLEVRRRLDT 5
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -2
Query: 85 RTSAKAFAKGVFINQERKLEVRRRLDT 5
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDT 55
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -1
Query: 110 VKFLDRRKTNISESICQRCFHQSRTKV 30
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -2
Query: 88 RRTS-AKAFAKGVFINQERKLEVRRRLDT 5
R+T+ ++ + FINQERKLE RRR DT
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDT 36
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -1
Query: 110 VKFLDRRKTNISESICQRCFHQSRTKV 30
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -2
Query: 88 RRTS-AKAFAKGVFINQERKLEVRRRLDT 5
R+T+ ++ + FINQERKLE RRR DT
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDT 36
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/29 (65%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = -2
Query: 88 RRTS-AKAFAKGVFINQERKLEVRRRLDT 5
R+T+ ++ AK VFINQERKLE RRR DT
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDT 36
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 110 VKFLDRRKTNISESICQRCFHQSRTKV 30
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 33.9 bits (74), Expect = 0.094
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -1
Query: 110 VKFLDRRKTNISESICQRCFHQSRTKV 30
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = -2
Query: 88 RRTS-AKAFAKGVFINQERKLEVRRRLDT 5
R+T+ ++ + VFINQERKLE RRR DT
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDT 36
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -2
Query: 88 RRTS-AKAFAKGVFINQERKLEVRRRLDT 5
R+T+ ++ + FINQERKLE RRR DT
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDT 36
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 107 KFLDRRKTNISESICQRCFHQSRTKV 30
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 30.7 bits (66), Expect = 0.88
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 343 FRTPAHRRYAPQTCQYHRGCXAPDSAAHKCNYELFNRNNFSIRYWS-WNYRGC 498
FRT R Y + HR C A + H C +F R ++R WS ++ GC
Sbjct: 357 FRTLKQRSYK---IRVHRKCCACGRSVHTCAALVFARFTLALRLWSLGSHLGC 406
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 171 QNSEVMINRDNWGHSY-CXVRGEILGSSQDEHQRKHLP 61
Q EV +++ GH Y C GE++ S++D H+ +P
Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
Length = 203
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 430 CNYELFNRNNFSIRYWSWNYRGCWH 504
C + RN +RYW W R C H
Sbjct: 91 CEVTVIARNILPVRYWIWLSRKCGH 115
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,262,518
Number of Sequences: 59808
Number of extensions: 283348
Number of successful extensions: 639
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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